Odocoileus virginianus (white-tailed deer): 110143252
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Entry
110143252 CDS
T10722
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X2
KO
K16498
protocadherin delta 1
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
110143252 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ovr01009
]
110143252 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ovr04515
]
110143252 (PCDH1)
Protein phosphatases and associated proteins [BR:
ovr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110143252 (PCDH1)
Cell adhesion molecules [BR:
ovr04515
]
Cadherins
Protocadherins
110143252 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
110143252
NCBI-ProteinID:
XP_020758525
UniProt:
A0A6J0YA76
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All DBs
Position
3:complement(49480114..49506495)
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AA seq
1237 aa
AA seq
DB search
MDCRARGRRCPESALLILEPAPMGPLRHSPGPGERRLLLPTLLLALLLLLAPSPGHATRV
VYKVAEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPEN
TNIGSLFSIPVASDRDAGPNGVASYELQVGPEAQELFGLQVAEDQEGKQPQLIVMGNLDR
ERLDSYDLTIKVQDGGNPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK
DRGTNPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVVAEVTASDADSGSNAE
LVYSLEPEPAAKGLFTISPETGEIRVKTSLDREQRESYELKVVAADRGSPSLQGTATVLV
SVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFVI
QNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSN
TSHRLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSSKVSKGNKSKGKKSKSPKPVKPVEDEDETGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQELPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSS
PSRRTKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPPYSAFSHSSHD
SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggactgcagggcccgcggccggcgctgcccagagtcggcccttctgattctggagcct
gccccaatggggcccctgaggcacagcccaggccccggggagcgacgtctgctgctgccc
accctgctgctagcactgctgctgctgctggctccgtccccaggccatgccactcgggtg
gtgtacaaggtggctgaggaacagccacccaataccctcatcgggagcctcgccgccgac
tacggttttcccgacgtgggccacctgtacaaactagaggtaggcgccccgtacttgcgg
gtggatggcaagacgggtgacatctttaccaccgagacctctatcgaccgtgaggggctc
cgtgaatgccagaaccagctccctggtgagccctgcatcctggagtttgaggtgtctatc
acggaccttgtgcagaatggcagcccccggctgctggagggccagatagaggttcaggac
atcaatgacaacacgcccaacttcgcctcgccagtcatcacactgcccatccccgagaac
accaacatcggctcactcttctccatcccggtggcttcggaccgagatgctggccccaac
ggcgtggcgtcatatgagctgcaggtggggcccgaggcccaggagctatttgggctgcag
gtggcagaggaccaggaggggaagcagccgcagctcatcgtgatgggcaacctggaccgg
gaacgcctggactcttacgacctcaccatcaaggtgcaggatggtggcaaccccccacgt
gccagcagcgccctgcttcgggtcactgtgctcgacaccaatgacaatgcccccaagttc
gagcggccatcctacgaggctgagctgtctgagaacagccccataggccactcagtcatc
caggtgaaggccaacgactcagaccaaggtgccaacgcagagatcgactacactttccac
caggcgcctgaagtcgtgagacgtcttctgcgactggacaggaacaccggacttatcact
gtgcagggccccgtggaccgtgaggacctgagcaccctccgtttctcggtgctggccaag
gaccgtggcaccaaccccaagagtgcccgagcccaggtggtggtgactgtgaaggacatg
aacgacaatgcgcccaccatcgagatccgtggcatagggctggtgacacaccaggacggg
atggctaacatctcggaggatgtggcagaagagacagctgtggccctggtgcaggtatct
gacagagacgagggagagaatgcggctgtcacctgtgtggtagcaggcgatgtgcccttc
caactccgccaggccagtgagacgggaagcgacagcaagaagaagtacttcctgcaaact
accaccccgctcgactacgagaaggtcaaagactacaccatcgagattgtggccgtggac
tctggcaacccgccgctctccagcaccaattccctcaaggtgcaggtggtggacgtcaat
gacaatgcgcctgtcttcacccagagtgtcaccgaggtcgctttcccagaaaacaacaag
ccgggtgaagtggttgccgaggtcactgccagtgacgccgactcaggctccaatgctgag
ctggtttactctctggagcctgagccagctgccaagggcctcttcaccatctcacctgaa
actggagagatccgggtgaagacatccctcgatagggaacagagggaaagctatgagttg
aaggtggtggcagccgaccggggcagccccagcctccagggcacagccactgtcctcgtc
agcgtgctggactgcaatgacaacgaccccaagtttatgttgagtggctacaacttctcg
gtgatggagaacatgccagcactgagtccggtgggcatggtgactgtcattgatggggac
aagggggagaatgcacgggtgcagctcacggtggagcaggacaacggtgactttgttatc
cagaacggcacgggcaccatactctccagcctgagcttcgatcgggagcagcaaagcacc
tataccttccaactgaaagctgtggacggtggtgtcccacctcgctcggcttacgttggt
gtcaccatcaacgtgctggatgagaatgacaacgcaccttttatcactgccccttccaac
acctcccaccggctgctgaccccccagacccgtctgggtgagaccgtcagccaggtgaca
gctgaggacattgactctggtgtcaatgctgagctgacctacagcatcgctggtggcaac
ccttatggacttttccagattgggtcacattctggtgccatcaccctggagaaggagatt
gagcgccgccaccatgggctgcaccgcttagtcgtgaaggtcagtgaccgcggcaagccc
ccacgctacggcacagccctggtccacctgtatgtcaacgagaccctggccaaccgcacg
ctgctggagaccctactgggccacagcctggacacgccgctggacatcgacatcgccggg
gacccagaatacgagcgctccaagcagcgcggcaacatcctctttggtgtggtggctggt
gtcgtggccgtggccttgctcatcgccctggctgtgctagtgcgctactgccggcaacgg
gaggccaagagtggctaccaggccggcaagaaggagaccaaggacctgtacgcccccaag
cccagcagcaaagtttccaagggcaacaaaagcaagggcaagaagagcaagtctcccaag
cccgtgaaaccggtggaggatgaggatgagaccggcctgcagaagtctctcaagttcaac
ctgatgagcgacgcccccggggacagtccgcgcatccacctgcccctcaactacccacca
ggcagccctgacctgggtcgccactatcgctctaattccccactgccttccatccagttg
cagccccagtcgccctccgcctccaagaagcaccaggtggtgcaggaactgccgcctgca
aacacattcgtgggcaccggggacacgacgtccacgggctctgagcagtactccgactac
agctaccgcaccaacccccccaaataccccagcaagcagttacctcaccgccgcgtcacc
ttctctgccaccagccaggcccaggagttgcaggacccatcccagcatagttactacgat
agtggcctggaggagtccgagacgccatccagcaagtcatcatcagggccccgactgggt
cccctggctctgcctgaggatcactatgagcgcaccacccctgatggcagcataggagag
atggagcaccctgagaacgacctgcgccctctgcctgacgtcgccatgacgggcacctgt
acccgcgagtgcagcgagtttggccactccgacacgtgctggatgccaggccagtcgtct
cccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac
cgaggagggcaggagcctgcgggcgccggcagccccagccccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgcccccctacagtgccttctcccacagtagccatgat
tcctgcaaggactcggccaccttggaggaaatccccctgacccagacctcggacttccca
cccgcggccacaccggcatctgcccagacggccaagcgtgagatctacctgtga
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