KEGG   Odocoileus virginianus (white-tailed deer): 110146034
Entry
110146034         CDS       T10722                                 
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ovr  Odocoileus virginianus (white-tailed deer)
Pathway
ovr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ovr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110146034 (PRPF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ovr03041]
    110146034 (PRPF4)
Spliceosome [BR:ovr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    110146034 (PRPF4)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 PRP4 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_EML WDR90_beta-prop_4th NBCH_WD40 Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_Vps41 WD_LRWD1 Beta-prop_IFT140_1st WD40_like Ge1_WD40 Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 110146034
NCBI-ProteinID: XP_020762285
UniProt: A0A6J0YKC0
LinkDB
Position
31:complement(9833593..9853638)
AA seq 524 aa
MASSRPSSTVQQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGLLGKEGLKA
GIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEP
ITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVAR
LWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCH
FSPDSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS
CAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEI
LHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPN
GYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWT
HPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq 1575 nt   +upstreamnt  +downstreamnt
atggcttcctcacgaccctcctccacggtacagcaggcaaccaaaactaaggcaccagat
gacttagtggctcctgttgtgaagaaaccacacatctattatggaagtttggaagagaag
gagagggagcgtctggccaaaggagaatctgggcttttgggaaaagaaggactcaaagca
ggaattgaagcaggaaacattaacataacctctggagaagtgtttgaaattgaagagcac
atcagtgagagacaggcagaagtgttagcagagtttgagagaaggaagcgagctcggcaa
atcaacgtttccacagacgactcagaggtcaaagcttgccttagagctttgggggaaccc
atcacactttttggagaaggtcctgctgaaagacgagaaaggttaagaaatatcctctca
gtggtcggtactgatgccttaaaaaagaccaaaaaagatgatgagaaatcaaagaagtcc
aaagaagagtatcagcagacctggtaccatgaaggaccaaacagcctgaaggttgctaga
ttgtggattgctaattactcactgcccagggcaatgaaacgcttggaagaggcccgtctc
cataaagagattcctgagacaactagaacctcccagatgcaagagctgcacaaatctctc
cgatctttgaataatttctgcagtcagattggggatgatcggcctatctcctactgtcac
tttagccccgattccaaaatgctggccacggcttgttggagtgggctttgcaagctctgg
tcagttcctgattgcaacctccttcacactcttcgaggccataacacaaacgtgggagcg
atcgtattccaccccaaatccacggtctccttggaccaaaaagacgtcaatctggcctct
tgtgctgctgacggttctgtgaagctgtggagccttgacagtgatgaaccggtggcagat
attgaaggccacacagtgcgtgtggcccgtgtaacgtggcatccatcaggacgcttctta
ggtaccacctgctatgaccgatcatggcgcttgtgggatttggaagctcaagaggagatc
ctgcatcaggagggccacagcatgggtgtgtatgacattgccttccatcaagatggctct
ttggctggcactgggggactggatgcatttggtcgagtttgggacctgcgcacaggacgt
tgtatcatgttcctagaaggtcacctgaaggaaatatatggaataaatttctcccccaat
ggctaccacattgcaactggcagtggtgataacacctgcaaagtatgggaccttcgacag
cgacgttgtgtctataccatccctgcccatcagaacttagtgacgggtgtcaagtttgag
cctatccatgggaatttcttgctcactggtgcctatgataacacagccaagatctggact
cacccaggctggtcccctctgaagactctggccggccacgaaggcaaagtgatgggccta
gacatttcttccgatgggcagctcatagccacttgctcctatgacaggaccttcaaactc
tggatggctgaatag

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