Odocoileus virginianus (white-tailed deer): 110146114
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Entry
110146114 CDS
T10722
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr04140
Autophagy - animal
ovr04142
Lysosome biogenesis
ovr04145
Phagocytosis
ovr04148
Efferocytosis
ovr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
110146114 (VPS39)
04142 Lysosome biogenesis
110146114 (VPS39)
04140 Autophagy - animal
110146114 (VPS39)
04148 Efferocytosis
110146114 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
110146114 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ovr04131
]
110146114 (VPS39)
Membrane trafficking [BR:
ovr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
110146114 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
LIF1_N
Beta-prop_RIG_2nd
VPS18_solenoid_2nd
DUF4145
Beta-prop_WDR36-Utp21_1st
Lgl_C
SAM_CEP-1_C
Motif
Other DBs
NCBI-GeneID:
110146114
NCBI-ProteinID:
XP_020762465
UniProt:
A0A6J0YKW7
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Position
6:complement(27228121..27273442)
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AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGANKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLVEGTPTIKSKRKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDRVLGFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKAPVPAGEEEGELGEYRQKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccgatcctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaagaatggctgcttgttggaacaaaacaaggtcatcttcttctctat
aggattcggaaagatgttggttgcaacaggtttgaagtgacattagagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtctcccagtttaagattctggtcagc
ttgttagaaaataatatttacgtccatgacctgttgacatttcaacaaatcactacggtt
tccaaggcaaagggagcgtcgttgttcacatgtgacctccagcacacagagactggggag
gaggtgttgcggatgtgtgtggctgtgaaaaagaagctgcagctctatttctggaaagac
agggaatttcatgaattgcagggggactttagtgtaccagatgtgcccaagtccatggca
tggtgtgaaaattctatctgtgtgggcttcaagagagactactatctaataagggtggat
ggaaagggggccaacaaagagctcttcccaacaggaaaacagctggagcccttagttgca
cctctggcggatggaaaagtggccgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatctgcacacagaagtgtgccctgaactggacagacatcccagtggccatggag
caccagcctccctacatcattgcagtgttgcctcgatatgtggaaatccgaacatttgag
ccgaggcttctggtccagagcattgaactgcaaagaccccgttttattacctcgggcgga
tcaaacattatctatgtggccagcaatcactttgtctggagactcattccagtccccatg
gcgacacaaatccaacagcttctccaggacaagcagtttgaattggctttgcagctcgca
gaaatgaaagatgattccgacagtgaaaagcagcaacagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgtttcgatgagtccatgcaggtctttgctaaa
cttggcacagatcctacccatgtgatgggcctgtacccagacctgctgcccacagactac
aggaagcagctgcagtatcctaacccactgcctgtgctgtctggggctgagctggagaag
gctcacttagctctgattgactacctgacccagaaacgaagccagttggtaaagaagctg
aatgactcagaccaccagtctagcacctcgcctctcgtggaagggacccctaccatcaag
tccaagaggaagctgctgcagatcattgacaccaccctgctcaagtgctaccttcacacg
aacgtggccctcgtggcccccttgctccgtctggagaacaatcactgccacattgaagag
agcgagcacgtgctgaagaaggctcacaagtacagcgagctgatcatcctgtacgagaag
aaggggctccacgagaaagctctgcaggtgctggtggaccagtccaagaaagcaaattcc
cctctgaaaggccatgagcggacagtgcagtacctgcaacatctgggcacagaaaatctg
catttaattttttcctactcagtgtgggtgctgagagactttccagaggatggcctgaag
atatttactgaggacctcccagaggtggaggctctgccacgagaccgagtgctgggcttc
ttagtggagaattttaagggtctggctattccttacctggaacatgtcatccacgtttgg
gaggagaccggctctcggttccacaactgcctgatccagctgtactgcgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaagctccagtccctgctggt
gaagaggaaggagagctgggagaataccgacagaagctccttatgttcttggaaatttcc
agctactatgacccaggccggctcatctgtgattttccttttgatggcctcttggaagaa
cgtgctctcctgctgggacgcatggggaaacacgaacaagctctcttcatctacgtgcac
atcctgaaagacacaaggatggctgaagagtactgccacaagcattatgaccaaaacaaa
gatggcaacaaagatgtgtatctgtccctgctccggatgtacctgtcaccccccagcgtg
cactgcctggggccgatcaagctggaactgctggagccacaagccaacctccaagccgcc
ctgcaggtcctggagctacaccacagcaagctggacaccaccaaggccatcaacctgctg
cccgcgaacactcagattaacgacatacgcatctttctggagaaggtcttagaagagaat
gcccagaagaaacggttcaaccaagtgctcaagaaccttctccatgcagagttcctgagg
gtccaggaagagcgcattctacaccagcaggtgaagtgcatcatcacggaggagaaggtg
tgcatggtgtgtaagaagaagattgggaacagcgcatttgcaagataccccaatggggtg
gtcgtgcattacttctgctccaaagaggtcaacccggctgacacctga
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