Odocoileus virginianus (white-tailed deer): 110147005
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Entry
110147005 CDS
T10722
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110147005 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ovr03041
]
110147005 (PRPF40B)
Spliceosome [BR:
ovr03041
]
Complex A
U1 snRNP components
U1 related factors
110147005 (PRPF40B)
Complex B
110147005 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
110147005
NCBI-ProteinID:
XP_020763876
UniProt:
A0A6J0YS42
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Position
24:complement(27869054..27889294)
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AA seq
921 aa
AA seq
DB search
METSKLQMTLMGLSQLTLDWQKKEQSVPESGPRPPAAPAPFPPGPPMMPPPFMPPPGIPP
PFPPMGLPPMSQRPPAIPPMPPGIMPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVT
TATAPGADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLL
SQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEALVKQEAAGKQQQPQTLQPQPPQ
PQPDPPPVPPGPTLLPTGLLEPEPGGSEDCTVSEAAQPLEQGFLQQPEEGPSSSAGQHQP
PQQEEEESKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSAL
PKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFG
ELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWS
QAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNR
EAFQTFLDELHETGQLHSMSTWMELYPAVSTDIRFANMLGQPGSTPLDLFKFYVEELKAR
FHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAR
EREREKEEARRLRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIR
LFREFLQVLETECQHLHSKGRKHGRKGKKHHRKRSHSPSVSWRGSESGDEELPPPSLRPP
KRRRRNPSESGSEPSSSLDSVESGGAALGGRGSPSSRLLLGSDHGLRKAKKPKKKTKKRR
HKSNSPESETDPEEKAAKESDEKEPEQDKDRDLRRAELPNRSPAFGIKKEKTGWDTSESE
LSEGELERRRRTLLQQLDDHQ
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggaaacttccaaactacagatgactttgatggggctcagccagctgactctggactgg
caaaagaaagaacagtcggttcccgagtctggtccccggcccccagcagcgcctgccccc
ttcccaccggggccccccatgatgccaccacccttcatgcctcctccaggaatcccccca
ccttttcctccaatggggcttcctcccatgagtcagagaccaccggccatcccccccatg
ccacctggcatcatgcccccaatgctcccaccaatgggggcaccaccaccgctcacacag
ataccaggaatggtacctcccatgatgccaggaatgctgatgccagcagtgcccgtcacc
acagcgacggctccgggtgcggacaccgccagctctgctgtggctgggacaggccctccg
agggcactgtggagtgagcatgtggcccctgatgggcgcatctactactacaatgctgac
gacaagcagtccgtgtgggagaagcccagcgtgctcaagtccaaggcagagctcctgctg
tcccagtgtccctggaaagagtacaagtcggacacaggcaaaccttactactacaacaat
cagagtaaggagtcccgctggacccggcccaaggacctggatgacttggaggctctagtc
aaacaagaggctgcagggaaacagcagcagccacagacactacagccacagcctcctcag
cctcagcccgatcccccacctgtgccgcctggccccaccttgctgcccacaggcctccta
gaacctgagccaggtgggagtgaagattgcactgtgtcagaggctgcccagcccctggag
caggggttcctgcagcagccagaggagggccccagcagttctgctggacagcatcagcca
ccacagcaagaggaagaagaatcaaaaccggagccggagaggtctggtctcagttggagt
aaccgggagaaggcaaagcaggccttcaaggagctgctgagggacaaggctgtcccctcc
aatgcttcgtgggaacaggccatgaagatggtggtcactgacccccgttacagtgccttg
cccaaactgagtgagaaaaagcaggcattcaatgcctacaaagcacagcgggagaaggag
gagaaggaagaggcccggctaagagccaaggaggccaagcagaccttgcagcatttcctg
gagcagcatgaacgcatgacctccaccacccgctaccggcgggcagaacagacgtttggg
gagctggaggtctgggctgtggtccctgagagggatcgaaaagaggtttatgatgatgtc
ctcttcttcctggccaagaaggagaaggaacaggctaagcagctgcggcgccgcaacatc
caggccctgaagagcatcctagatgggatgagtagtgtcaacttccaaaccacctggtcc
caggcccagcagtacctcatggataatcccagctttgctcaggaccatcagctgcagaac
atggacaaggaagatgcgctgatctgctttgaggagcacatccgagctttggagagggag
gaggaggaggagcgagagcgagcccgacttcgggagcggcgccagcagcgcaagaaccgg
gaggccttccagaccttcctggacgagctgcacgagacagggcagctgcactccatgtcc
acctggatggagctgtacccagcggtcagcactgacatccgctttgccaacatgctgggc
cagccgggctccacccctctggacttgttcaagttctatgtggaggagttgaaggcacga
ttccatgatgagaagaagatcataaaggacatccttaaggaccggggcttctgcgtggag
gtgaacacagccttcgaggacttcgcccacgtcataagctttgacaagagggctgctgcg
ctggatgcaggcaacatcaagctgactttcaatagtctgctggaaaaagcagaggcacgc
gagagagagcgggagaaggaggaggcccggcggctgcggcgcagggaagctgccttccga
agcatgctgaggcaggctgtgcctgctctggagctgggcacggcctgggaagaggtccgt
gagcgctttgtgtgcgactcagcctttgagcagatcaccctggagtcggagcggatccgg
ctctttcgggagttcctgcaggtactggagacggaatgccagcacctccacagcaaaggc
cggaagcacggcagaaagggcaagaagcaccatcgcaagcgctcccactcaccttcagtg
agttggcggggctctgagtcaggagacgaggagctgcccccaccctctctccggcccccc
aagcggaggcgacggaacccctcggagtcgggctctgagccctcttcctcacttgattct
gttgaaagtgggggtgctgcccttggaggacggggttccccctcctctcgccttctcctc
ggatcagatcatggtcttcggaaagccaagaaaccaaaaaagaaaactaagaagagaaga
cacaagtcgaacagtcctgagagtgagacagaccctgaggagaaagctgccaaggagagt
gatgagaaagaaccagaacaggacaaggacagggacctccggcgggcagagctccctaac
cgctccccagcctttgggatcaagaaggagaagacgggctgggacacgtcggaaagcgag
ctgagcgagggggagctggaaagacggcggcggacgctcttgcagcagctggacgaccac
cagtga
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