Odocoileus virginianus (white-tailed deer): 110148101
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Entry
110148101 CDS
T10722
Symbol
AFDN
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr04014
Ras signaling pathway
ovr04015
Rap1 signaling pathway
ovr04024
cAMP signaling pathway
ovr04517
IgSF CAM signaling
ovr04520
Adherens junction
ovr04530
Tight junction
ovr04670
Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04014 Ras signaling pathway
110148101 (AFDN)
04015 Rap1 signaling pathway
110148101 (AFDN)
04024 cAMP signaling pathway
110148101 (AFDN)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
110148101 (AFDN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
110148101 (AFDN)
04530 Tight junction
110148101 (AFDN)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
110148101 (AFDN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RA_3
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
110148101
NCBI-ProteinID:
XP_070317450
UniProt:
A0ABM4HPF3
LinkDB
All DBs
Position
34:complement(1637003..1750675)
Genome browser
AA seq
1802 aa
AA seq
DB search
MSAGGRDEERRKLADIIQHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCI
RVSSTATTQDVLETLAEKFRPDMRMLSSPKYSLYEVHVSGEERRLDIDEKPLVVQLNWNK
DDREGRFVLKNENDAIPAKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKKREKEAVRQ
ASDKDDRPFPGDDIENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLERRMQEFRS
SDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADFAVAEALEKYGLEKENPRDYCIAR
VMLPPGAQHSDEKGAKEVILDDDECPLQIFREWPSDRGILVFQLKRRPPDHIPKKSKKHV
DGKPLQGKERADGSAYGSALPPEKLPYLVELSPGRRNHFACYSYHTSEDGSDSRDKPKLY
RLQLSVTEVGTEKLDDSSIQLFGSGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISE
TTMLQSGMKVQFGASHVFKFVDPSQDHTLPKRSVDGGLTVKGPRHKSGIVQETTFDLGGD
VHSGAALPASRSAARLDSDRTPSASSTAERGMVKPMVRVEQQLDYRRQDSRTQDAPGPDL
ILPASIEFRESSEDSFLSAIINYTNSSTVHFKLSPTYVLYMACRYVLSSQYRPDVSPAER
THKVMAIVNKMVSMMEGVIQEVDQVDQKQKNIAGALAFWMANASELLNFIKQDRDLSRIT
LDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEEDSLQRPKIDDVLHTLTGAMSL
LRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPESGLCSHYWGAILRQQLGHVEAWAEK
QGLELAADCHLSRIVQATTLLTMDKYAPDDIPNINSTCFKLNSLQLQALLQNYHCAPDEP
FVPADLIENVVAVAENTADELARSDGREVRLEEDPDLQLPFLLPEDGYSCDVVRNVPSGL
QEFLDPLCQRGFCRLIPHPRSPGTWTIYFEGADYESHLLRENTELAQPLRKEPEIITVTL
KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQE
RAAELMTRTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQRISDRRGSGKPRPKSEGFELY
NNSAQNGSPESPQTPWAEYSEPKKLPGDDRLMKHRADHRSSPNVANQPPSPGGKSAYAPG
TAAKITSVSTGNLCAEEQTPPPRPEAYPIPTQTSTREYFTFPASRSQDRVAPPQSQWLGL
EEKPHVLADGDHSSAAVQRVTRSQEELREDAYRPERQRAEAAAEHRLDGSDAWPTQGSSL
GSSASSQEHLGPPSKTGTPASTLTKSGPGRWKTPAASPPVRTDPALPPPPPAGSYAGEAD
TDSPPPAAAAAAQAQAAAERKKREEQQRWYEKEKARLDEERERRRREQERRLGQLRAPAP
PPAPARTPDTVIRELQPQQQPRTIERRDLQYITVSREELASGDSLSPDPWKRDAREKLEK
QQQLHIVDLLSREIQELQGKAERSAEESDRLRKLLLEWQFQKRLQESKQKDEDDEEEEDD
DVDTVLLMQRLEAERRARQTAMPAISVLDLLQDEERRRQQQLEEMRTREAEERARQEEQR
RRQEDERVRREAEDKRRQEDGYYSRLEAERRRQHEEAERRLLEPEEPGLGRPPLPRGYEP
AGPPPPPQRTASYLQTQALSPDALYTAKFVAYNEEEDEDEEPAGANSYVGSAGAVFGAHD
VHRDPREKPSKSHEADVPGGPGAPENLTFRERQRLFSQGHDVSNKVKASRKLTELENELN
TK
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgggcggccgcgacgaggagcggcggaagctggccgacatcatccagcactgg
aacgccaaccggctggacctgttcgagatcagccagcccaccgaggatttggagttccac
ggagtgatgagattttattttcaagataaagccgccgggaacttcgccacgaaatgcatc
cgggtgtccagcaccgccaccacccaggacgtgctggagacgctggccgagaagttccgc
cccgacatgcggatgctgtcgtcacccaagtactcactctacgaggtgcacgtcagcgga
gaagaaagaagattggatatagatgagaaacccctggtggtgcagctgaactggaataaa
gatgaccgagaggggcggtttgtccttaagaatgagaacgatgccattcctgcaaagaag
gctcaaagtaacggacctgaaaagcaggaaaaagaaggtgttatccagaacttcaagaga
actctctcaaagaaggaaaagaaggaaaaaaagaagagagaaaaagaggcagtgagacag
gcgtctgataaagatgatagacctttccctggggatgacatcgagaattctcgcctcgcc
gccgaggtctacaaagacatgcctgagaccagctttacgcgaaccatctccaaccccgag
gtggtcatgaagcggcggcggcagcagaagctggagaggaggatgcaggagttccggagc
tcggacgggcggccggactcgggtggaacattgagaatttacgcagatagtttaaaacca
aatattccctacaagacgatcctgctgtccactacagaccctgcggacttcgccgtggca
gaagccttggagaagtatggcctggagaaggagaaccccagggactactgcatcgcccgt
gtcatgcttcctcctggagcccagcattctgatgaaaaaggtgctaaagaagttatcctt
gacgatgatgagtgtcctttacagatcttcagggaatggccaagtgacagagggatttta
gtctttcagttgaagaggaggccgccagaccacatcccaaagaaaagtaagaagcacgtg
gacgggaagcccctgcaggggaaggagagagccgatgggtcggcctatggctctgcgctg
ccccccgagaagctgccctacctcgtggagctgagcccggggagaaggaaccactttgcc
tgctacagctatcacacttctgaagatggctctgactccagagacaagccgaagctgtac
cgccttcagctcagcgtcaccgaggtggggaccgagaagctcgacgacagctccatccag
ttgtttggttcaggcattcagccccatcactgtgacctcacgaacatggacggggtggtc
acagtcacgccaagaagcatggacgctgagacctatgtggatgggcagcgcatctcggag
accacgatgctgcagagcgggatgaaggtgcagttcggggcgtcccacgtgtttaagttc
gtggaccccagccaggaccacacgctccccaagagatccgtggacgggggcctgaccgtg
aagggccccagacataagtctggaattgttcaggagacgactttcgatttaggaggagac
gttcacagtggagcggccttgccagcgagcaggagcgccgccaggctggacagcgacagg
acgccgtccgcctccagcactgccgagcgagggatggtgaagcccatggtccgcgtggag
cagcagctggactaccgccggcaggacagcagaactcaggatgctcccgggcctgacctg
atcctgcctgcaagcattgaattcagggaaagttctgaagattcatttttatctgccatt
ataaattacactaatagctctacagtccattttaagttgtcacctacatacgtattatac
atggcgtgtcggtatgtattgtccagccagtacagacctgacgtcagccccgcggaacgc
acgcacaaagtcatggccatcgtcaacaagatggtgagcatgatggaaggggtgatccag
gaagtagaccaggttgaccagaaacagaagaacattgcaggggcccttgccttctggatg
gccaatgcgtccgagctgctcaacttcatcaagcaggaccgagacctcagtcggatcaca
ctggacgcacaggacgtcctggcacacttggtgcagatggcctttaagtacctggttcac
tgtcttcagtcagagctgaataattacatgcccgcctttctggacgaccctgaagaggac
agtctgcagagaccaaaaatagacgacgtgctgcacacactcacgggcgccatgtccctg
ctgcgtcgctgccgggtcaacgccgcgctgaccatccagctcttctcccagctgttccac
ttcatcaacatgtggctgttcaaccgcctggtgaccgaccccgagtcaggtctctgctcc
cactactggggcgccatcctccgccagcagctcgggcacgtggaggcctgggccgagaag
cagggcctggagctggcggctgactgccacctgagccggatcgtgcaggcaaccactttg
cttacgatggataagtacgcacctgatgacattccaaatataaacagcacctgcttcaag
ttgaattccctgcagctccaagccttactgcagaattaccactgtgcccccgacgagccc
tttgtccctgcggacttgattgagaacgtggtggccgtggccgagaacacggcggacgag
ctggcgcgcagcgacggccgggaggtccggctggaggaggaccccgacctgcagctgccc
ttcctcctgcctgaggacggctactcctgcgacgtcgtcaggaacgtccctagcggcctg
caggagttcctggaccctctctgccagagagggttctgcaggttaattcctcacccacgc
tccccaggcacctggacgatatattttgaaggtgcagattacgagagtcaccttctgcgg
gagaacacagaactggcgcagcctctgcgtaaagaacctgaaatcatcactgtgaccctc
aaaaagcagaacggaatgggccttagcattgttgccgcgaagggcgctggtcaagacaaa
cttgggatttatgtcaagtccgttgtgaaaggaggcgctgcagacgtggacgggcggctc
gctgcgggtgaccagctactcagcgtggacggacggagtctggtgggactctctcaagaa
agggcagcagaactgatgacaaggacaagctccgtggtgacgctcgaagtggcaaagcaa
ggagccatttaccacggcctcgccaccctgctcaaccagccttcccctatgatgcagaga
atttcagaccgccgtgggtcaggtaaaccccgaccaaagagcgaaggctttgagctgtac
aacaactcggctcagaacgggtccccagagagcccgcagacgccctgggccgagtacagc
gagcccaagaagctgccgggcgacgaccggctgatgaagcaccgggcggaccaccgctcc
agccccaatgtcgcaaatcagcctcccagtcctggcgggaagagcgcgtatgccccggga
acagcagccaagatcacgtctgtctccacggggaacctctgtgctgaggagcagacgcct
ccgccccgccccgaagcctaccccatccccacccagacgtccaccagggagtacttcacc
ttcccggcctccaggtcccaggaccgcgtggcgcccccacagagccagtggctgggtctc
gaggagaagccccacgtgctggcagacggggaccactccagcgccgccgtgcagcgtgtg
acccgctcccaggaggagctccgtgaagacgcctaccgccccgagcggcagcgggcagag
gcggccgcggagcacaggttggacggcagcgacgcctggccaacccagggctcgtcgctg
ggctccagcgcgtccagccaggagcacctggggcccccctctaagacgggcacccccgcc
tccacactcaccaagagcggccccgggcgctggaagaccccggccgcctccccacccgtg
cggaccgacccggccctgccgccgccaccgcccgccgggtcctacgccggggaggcggac
acggactcgcccccgccagctgccgctgccgccgcccaggcgcaggcagccgccgagcgg
aagaagcgggaggagcagcagcgctggtacgagaaggagaaggcgcgcctggacgaagag
cgcgagcgccggcgcagggagcaggagcgccggctaggccagctgcgcgcgcccgcgccg
ccccccgctcccgcccgcacgccggacaccgtgatccgcgagctgcagccgcagcagcag
ccgcgcaccatcgagcgcagggacctgcagtatatcacggtcagcagggaggagctggcc
tccggggacagcctgtcccccgacccctggaagcgcgacgcgcgcgagaagctggagaag
cagcagcagctgcacatcgtggacctgctgagccgcgagatccaggagctgcagggcaag
gctgagcgctcggccgaggagagcgaccggctgcgcaagctgctgctggagtggcagttc
cagaagcggctgcaggagtccaagcagaaggacgaggacgacgaggaggaggaggacgac
gacgtggacaccgtgctgctcatgcagcgcctggaggccgagcgcagagcgcggcagact
gctatgccagcaatctctgttctagatttgttgcaggatgaggagcggcggcggcagcag
cagctggaggagatgcggacgcgggaggcggaggagcgcgcgcggcaggaggagcagcgg
cgccggcaggaggacgagagggtcaggcgcgaggccgaagacaagaggcggcaggaggac
ggttactacagccgcctggaggctgagcgccgccgccagcacgaggaggccgagcgccgg
ctgctggagcccgaggagccgggcctgggccgcccgccactcccgcgtgggtacgagccc
gccggcccgccgccgccaccgcagcgcaccgcctcctacctgcagacgcaggccctctcc
ccggatgccctctacaccgccaagttcgtggcctacaacgaagaggaggacgaggacgag
gagccggcaggagcaaactcttacgtgggatctgctggagcagtttttggagcccatgat
gttcatcgggatccgagagagaaaccgtccaagagccacgaagcagacgtccctgggggg
cccggagcccctgaaaacctgacattcagggagcgccagcgccttttctcccaaggccac
gacgtctccaataaagtcaaggcctctcgcaagctaacagagctggagaacgagctgaac
acgaagtga
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