Odocoileus virginianus (white-tailed deer): 110148637
Help
Entry
110148637 CDS
T10722
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ovr Odocoileus virginianus (white-tailed deer)
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ovr03016
]
110148637 (RTCB)
Enzymes [BR:
ovr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
110148637 (RTCB)
Transfer RNA biogenesis [BR:
ovr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110148637 (RTCB)
Prokaryotic type
tRNA splicing ligases
110148637 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
110148637
NCBI-ProteinID:
XP_020766381
UniProt:
A0A6J0YZF4
LinkDB
All DBs
Position
23:42910289..42928634
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIRKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagttataatgatgagctgcagttcttggaaaagatcaataagaactgctgg
agaatcaggaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
tccctggaaaaattaatgtttgaagaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggctgccctgcctgggattgttcat
cgatccattggtcttcctgatgtccattcaggttatgggtttgctattggaaatatggca
gcctttgatatgaatgaccccgaagcagtggtatccccaggtggtgtcggatttgacatt
aactgcggtgtccgcttgctgagaaccaatttagatgaaagtgatgttcagcctgtgaaa
gagcaacttgcccaagctatgtttgaccacattcctgtgggagtggggtcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agagaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caagctgatcccaataaagtctcagccagagctaaaaaaagaggccttccccagttgggg
actctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaacgag
tatgctgctaagaaaatgggcattgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtcgccacagatgcacttgtagctatggaaaaagcc
atgaagagagacaagatcatagtcaacgaccgtcagttggcttgtgctcggatcgcttcc
ccagagggtcaggactacctgaagggaatggcggcggctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctgcatgtgatctatgatgtttctcacaatattgccaaagtagaacag
catgtggtggacgggaaggagcggactctgttagtacacaggaaggggtccacccgagcc
ttccctcctcaccatccgctcattgcggttgattaccaacttactggacaaccagtgctc
attggtggcaccatggggacctgtagctatgttcttactggtactgagcagggcatgact
gaaacctttggaacaacttgccatggagcgggccgtgcactgtcccgagcaaagtcaaga
cgtaatttagatttccaggacgtcctcgacaaattggcagacatgggaattgcaatccgt
gtcgcctcacccaagctggtaatggaagaggcccctgagtcctataagaacgtgacggat
gtggtgaacacctgccatgatgctggaatcagcaagaaggccattaaactgaggccaatt
gctgttatcaaaggatag
DBGET
integrated database retrieval system
