Odocoileus virginianus (white-tailed deer): 110148796
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Entry
110148796 CDS
T10722
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X2
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
110148796 (SETX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ovr03021
]
110148796 (SETX)
Enzymes [BR:
ovr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110148796 (SETX)
5.6.2.5 RNA 5'-3' helicase
110148796 (SETX)
Transcription machinery [BR:
ovr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110148796 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
UvrD-helicase
AAA_22
ResIII
AAA_16
NAT10_TcmA_helicase
UvrD_C_2
SLFN-g3_helicase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
110148796
NCBI-ProteinID:
XP_020766658
UniProt:
A0A6J0YXX0
LinkDB
All DBs
Position
2:complement(97479522..97567291)
Genome browser
AA seq
2659 aa
AA seq
DB search
MSTCCWCTPGGTSTTDFLQRYASKTRSSEFQTADEDLCYCLECVAEYHKARDELPFLHEV
LWELETLRLINHFERSMKAEIGDDDELYIVDNNGEAQLFDFTGQDFENKLRVPLLEILKY
PYLLLHEHVNELCVEALCRMEQANCSFQVFDKHPGIYLFLVHPNEMVRRWAILTARNLGK
VDRDDYYDLQEVLTCLFKVIELGLLENPDIYTSSVLEKGKLVLLPSHMYDTANYKNYWLG
ICMLLTILEEQAMDSLLLGSDKQNDFMQSILHTMERQSNDDSVDPFWPALHCFMVILDRL
GSKVWGQLIDPIEAFQTIINNVSYNREIQHIRNSSMRTKLEPESYLDDMVTCSQIVYNYN
PEKTKKDSGWRSAICPDYCPNMYEEMETLANVLQSDIGQDMRVHNSTFLWFIPFVQSLMD
LKDLGVAYIVEVIHHLYSEVKDVLNQTNAVCDKVTEFFLLILVSVIELHRNKKCLHLLWV
SSQQWVEAVVKCAKLPTTAFARSSEKSSGNCSKGTAMISSLSLHSMPSNSVQLACVQLIR
SLLKEGYQLGQQTLCKRFWDKLNLFLRGNLSLGWQLTSQETHELQTCLKQIIRNIKFKVP
QCSTFVDLNPACKTPPSSYKEESEQMGKKSEKDGHCLENSSPTFSKEPMKADTYQVQESI
LSKANNAIEENKEPYYIKDLKLEDHLSAESCLKLSSKNLACERVQNQVKISTGKYKSVKE
NSSYTPQNGTLRNGPEKVFDRGIIISRHLLTVSSTDSLEKVSASNEDFSLKDVGLGKSSR
AKSKTHKDGVCAKLSHVIKKQHRRSISLEENLTVSSIESFYSKKDTGGQKGGGNICNPPL
VPNGILDDKNGEQKSQSCLLLGKKEVKKEKLDIFSTPENSSQIQESHVDTKDLVSLTEMT
NICMTKASPFKEPVAGRELRDRKISRSTDPFSSNLREQDLSSSPQPDTLTDSQVDRDLHR
LSLIAQATVTKFPSDSTQKSSSQIQRKVKDEKRCFTANQNIRETCHAQVIIISDSDDDDE
ERILGLKKHMKEIKACIEKECPEQHTSIANTNVEQKVIKEENPVSLLQFEESDSQFFEFE
TPCEVFSVWQDEKPDKNSAQENEKNLCLTHVGDTANDWGYETDYVSEEVIKKVAENFEEC
TKAHSSSTSVENFCEIEVKKPKRRRYEKPIAEDPLRPSSSSVKNEDQSDTNKGNLSENDF
KGVDTRSTVPSSSVQRNTAVSPKKSPPKPRTYSRPVRKVPVVKTSKKPHSDTKKGQSKSS
HYISCRTTPAIVPPKKFRQCPEPTSTVEKLGLKKAPRRAFELSQRSLECIVQLRDHGKTV
GVVDTRKKTKLISPQTLSVRNNKKLLTSQDLQMQRQMRSKSRRNRQERLDCQSTDMTRAG
PHAAQSSVPESSKSDYSHNGGAEVTANNKGKQLITCQSSETEPVKADQCNPVMVNGRIAT
NEVIVPTSEDPLGRGDLTVHRLEVATLKEGEPEFSSDIEEDNIFLTQRDPEDMDLCSQME
RENDKLIEVIPGKDTVQGEEDCVSQPQLESLSSTKCKYKDCVEALKNPGEYCSKHSKTKA
TDEDVFRKPGLPLSVSKRSRPSTTKVFSSSSTSRIAGLSKSLESTAALPSSLKNKSSGAQ
SVLKGPQPPLLVSLKPVAEVKGLCNVFPSQTPDNSNRQVSSVPFGENRSFLTSSPVNILM
SPQSICDTFVKEVLKWRYEMFVNFDQCGPPLSLCQSVTRRVPIRFQDCGDYFSVFFPLVL
LNTFETVAQEWINSPNKEKFHQLHLRKFPGDYKKYWEFVVYLEECQLAKQLHPKENDLVF
LVPENNEEKKDLEWSHLEDACEYYCGYIHKFRRTSVMRNGKTECSVSIQTQDNLPVNLNE
LVKCFVISSLVTTQRKLKAMSLLSGRNQLARAILNPNPMDFCTKDLLTTASERIVAYLKD
FNEDQKKAIETAYAMVKHSSSVAKICLIHGPPGTGKSKTIVGILYRLLTENQKRGHSDEN
SNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDRKNPMGNCGDINLVRLGPEKSIN
NEVLRFSLDSQVNHRMKKDLPSHVQEMHKRKEFLDRQLDELSRQRALCRGGRESQRQELD
GKIARVSKERQELASKIKEVQGRPQKTQSIIILESHVICCTLSTSGGLLLEAAFRGQGGV
PFSCVIVDEAGQSCEVETLTPLIHRCNKLVLVGDPKQLPPTVISVKAQDYGYDQSMMARF
HKLLEESVEHNMIGRLPVLQLTIQYRMHPDICLFPSSYIYDGTLKTNRGTETSRCSSDWP
FQPYLVFDVGDGSERRDNDSYVNVQEIKLVMELIKLIKDKRRDINFRNIGIITHYKAQKT
MIQKDLDKEFDRKGAAEVDTVDAFQGRQKDCVIVTCVRASATQGSIGFLASLQRLNVTIT
RAKYSLFILGHLRTLVENRHWYHLIQDAQKRGAIIKTCDKNYRHDVMKILKLKPLLQRSL
THPPTVAPEAYRPQGGLPSSKQDSELSKTSFASSLYHSPSDSKEATVTDAAKDPERPPNQ
DRLRDPRLLRRLGLAFDAQGINLREPQPLSPQHSGAAPPLGAPGCPGSPQEPCTIGQQGV
TLNNHTPHMQCDSPAASTDTSTSKEKCDQEEGVLGHRRETRALSEGDQEWWASSHTKRNS
DWDEGGLEEDSSSKKRRVL
NT seq
7980 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatgttgttggtgtaccccaggtggtacttccaccactgacttcctgcaacgc
tatgcatccaagacccgctccagtgaatttcagacagctgatgaagacctctgctactgc
ttggagtgtgtggctgagtaccacaaagcaagggacgaattgccattcttacatgaggtt
ttatgggaattagaaaccttacgtctcataaatcactttgaaagatccatgaaggcagaa
attggagatgatgatgagttatatatagtagacaacaacggagaggcacagctgtttgac
ttcactggccaagactttgaaaataagcttcgagttcctcttcttgaaatactgaaatat
ccatatctgcttttacatgagcatgtcaatgaattatgtgttgaagcactttgccggatg
gaacaagctaattgctcctttcaagtttttgacaaacatccagggatctatttatttttg
gttcatcccaatgaaatggttcggcgttgggctatcctgactgcaagaaacttagggaag
gtggatagagatgattactatgacttacaggaggttttgacttgcctttttaaagttatt
gagttgggacttttagaaaacccagacatttatacttcttctgtccttgagaagggtaaa
ctggttcttctgccttcacacatgtatgatactgccaactacaaaaactattggttaggt
atttgcatgctgctgaccattcttgaggaacaagccatggattcactgttgctgggctca
gataaacagaatgattttatgcagtcaatacttcacaccatggagaggcaatcaaatgat
gatagtgtggatcctttctggccagcgttacactgtttcatggtgattctggatcgcctt
ggatctaaggtctggggtcaacttattgatcctattgaagcatttcaaaccattataaac
aacgtgagctacaatagagagatccagcatatacggaatagctctatgaggaccaagtta
gagccggagtcatatttggatgatatggtgacttgcagccagattgtatacaattacaat
cctgaaaagaccaaaaaggattcagggtggagatcagccatttgccccgattattgtcct
aacatgtatgaagaaatggaaacattagctaacgtgctccagtcagatattggtcaggac
atgcgtgttcataacagcacatttctgtggttcatccctttcgtgcagtccctcatggac
ctgaaggatctgggtgtggcttacatagtggaggttattcaccatctatactctgaagtc
aaagatgttctcaaccagacaaatgctgtgtgtgacaaagtcactgagttttttcttctg
attttggtgtccgtgattgaactgcatagaaataaaaaatgtctacatttgctgtgggtt
agttcccagcagtgggtggaggctgtggtgaagtgtgccaagctcccgaccacagcgttt
gcacggagttctgagaagtcatctggaaactgttccaaaggcacagcaatgatatcgtcc
ctgtccctgcattcgatgccctccaactctgtgcagctggcttgtgtgcagctgattaga
agtctcctgaaagaaggctatcagcttgggcaacagacactctgtaagcggttctgggat
aagctcaacttattcctgcgaggaaatttatctttaggttggcagttgactagtcaggaa
acccatgagctacaaacttgtttaaagcaaattattaggaacataaaattcaaagtacct
cagtgtagcacttttgtggatctgaatcctgcatgtaagacgcctccttcatcttataaa
gaagaaagtgaacaaatggggaagaagtctgaaaaagatgggcactgtctggaaaattcc
agcccaacattttctaaagaaccgatgaaagctgatacttatcaagtgcaagagagtatt
ttgagcaaagcaaataatgccatagaagagaataaagagccatattatataaaagatttg
aaactagaagaccacctctcagctgagtcatgtttgaagctgagtagtaaaaaccttgcc
tgtgaaagagttcaaaatcaagttaaaataagtacagggaaatataaatctgtaaaagag
aattcctcatataccccacagaatggtactttaagaaatggtccagaaaaagtatttgac
agaggaataataatatcaaggcacttgttgactgtttctagcacagactccctggaaaaa
gtgtctgcctctaatgaggacttctctttaaaggatgttggtcttggcaaaagctcaaga
gcaaaatctaagacacataaagatggagtgtgtgctaagttgtcacatgtaataaaaaag
caacacaggagaagtatcagtttagaggaaaacctgactgtgtctagcattgagagtttc
tattcaaagaaagatacaggaggtcagaaaggaggtggaaacatatgcaatcctccttta
gtcccaaatggtattctggatgataaaaatggagaacaaaaatctcaaagctgtttactg
ctgggaaagaaagaagtaaagaaagaaaagttagatattttctctacccctgaaaatagt
agtcaaatacaggaatctcatgttgataccaaagatttggtgtcactcacagaaatgacc
aacatttgcatgacgaaagcatctccctttaaagagcctgtggctggtcgtgaattgaga
gataggaaaattagtaggagcactgatccgttttcttctaatttaagagaacaggacctt
agcagcagtccacagcctgacaccttaacagattctcaggtagacagagacctccacaga
ttatctttaatagctcaagccactgttactaagttcccatcagattcaactcaaaaaagt
tcatcccagatacaaaggaaagtaaaagatgagaaaagatgttttacagcaaaccaaaat
atcagggaaacctgccatgcacaggttattattatttcagattccgatgacgatgatgag
gaaagaattctgggtttgaagaaacacatgaaagagatcaaagcatgcattgagaaagaa
tgtccagagcaacatacttcaatagctaacacaaatgtggaacagaaggtaataaaggaa
gaaaatccagtgtcccttttgcagtttgaggaatctgattctcagttttttgagtttgaa
actccatgtgaagtgttttcagtttggcaagatgagaaaccagacaagaattcagctcaa
gagaatgaaaaaaatctatgcttgactcatgtgggtgatactgcaaatgattggggttat
gagacagattatgtatctgaagaggtcattaaaaaggtagcagagaactttgaagagtgc
acaaaagcacatagcagtagtacttctgttgagaacttttgtgaaattgaagtaaaaaaa
cccaagagaagacgatatgaaaaacctatagccgaagatcctctaaggccttcttcatct
tctgtcaaaaatgaggaccagtctgatactaacaagggaaatctgagtgaaaatgatttt
aaaggtgtagacacaaggtctacagttcccagttcaagtgttcagagaaacactgcggtt
tccccaaagaagtctcctccaaagcctcgcacgtattccagacctgtcaggaaagttcca
gtggttaaaacttctaagaaaccccattcagataccaagaaagggcagagtaaaagttcc
cattacataagctgtagaacaactcctgctattgtgccgccaaagaaatttcgccagtgt
cctgaaccaacttcaacagttgagaaacttggcctgaaaaaggcccctcgtagggcgttt
gaattgtcccagcgatctttagagtgtatagttcagctgcgtgaccatggcaaaactgtt
ggagtagtggatacccggaaaaagacgaagttaatttctcctcagactctctctgtcaga
aataataagaaactgctgacaagtcaagaccttcagatgcaaaggcagatgagatccaaa
tcacggcgaaacagacaagaacgtttagattgtcaaagtacagatatgacacgagcaggg
ccacatgccgcacagagttctgtgccagaatcaagtaagtcagattatagtcataatgga
ggagccgaagtgactgctaacaataaggggaaacagttaataacttgtcagtcttctgaa
acagaacccgtgaaagcagaccagtgtaatcctgtcatggtaaatggaagaatagcaaca
aatgaagtcattgttcctacctcagaggacccactaggcagaggtgacctgacagttcat
cgtttagaggtggcaactttgaaagagggagagcctgaattcagcagtgacatagaggaa
gataatatatttttaacacagcgtgaccctgaagacatggatttatgttcacaaatggag
agagagaatgataaactcattgaagtcattcctggaaaagatacagtccagggagaggaa
gattgtgtgagtcagcctcagttggaatctttgagtagcacaaaatgtaagtacaaagat
tgtgttgaagctctgaaaaacccgggtgaatactgctcaaaacactcaaaaactaaagcc
acagatgaagatgtatttcgtaaaccgggcttgcctctgtctgtatcaaaacgttcgaga
ccttccacgaccaaggtttttagttcaagcagtacttcacggattgctggtctctccaag
tctttggaaagtaccgcagccctcccatcatctctgaaaaacaagtcaagtggggcacag
tctgttctgaaaggaccacagcctccccttctggtgtctctgaagccagtggctgaagtg
aaaggtctgtgcaatgttttcccttctcagactccagataactccaacaggcaagtttca
agcgttccatttggggaaaacagatcttttttgacttcctctccagtaaacattctcatg
tcgccacagtccatctgtgatactttcgtaaaagaggtcttgaaatggagatacgagatg
tttgtgaactttgatcagtgtgggcccccgttgagtctgtgtcagtctgtcacaagacgg
gtgcctatcaggtttcaagactgtggagattattttagtgtgtttttccctttggtttta
ctgaacacttttgaaacggtggcacaggaatggatcaactctccaaacaaagagaaattc
catcagttgcatttacgaaaatttcctggtgattataaaaaatactgggagtttgtggtt
tatcttgaggaatgtcaactagctaaacagcttcatccaaaggaaaatgatttggtgttt
ttggttcctgaaaacaatgaggagaagaaagatttagagtggagtcatctggaggatgcc
tgtgaatattactgtggctatattcataaattccgccgtacttcagtcatgcgcaatggg
aagactgagtgttcggtttccatccagactcaagataatttaccagtcaatttaaatgaa
ctcgtgaaatgctttgtgatcagctctctggtgactacacaaaggaagttgaaagccatg
tctttgctgagtggtcggaaccaactggccagagccattctgaatccaaaccccatggac
ttctgtacaaaagatttactaactacagcatctgagagaattgttgcctacttaaaagat
ttcaatgaagaccagaagaaagcgatagaaactgcatatgccatggtgaaacactcctca
tcagttgccaagatctgtctgattcatggaccacctggaacaggaaaatcaaaaaccatt
gttggcatcctgtaccgcctgctgacagagaaccaaaagagggggcattcagatgaaaac
tccaatgccaaaatcaagcaaaaccgtgtcctcgtatgtgcaccttccaatgcagctgtt
gatgaacttatgaaaaaaattatccttgaattcaaagaaaagtgtaaagacaggaagaat
cctatgggaaactgtggagatataaacttagtacgtctaggtccagaaaagtcgattaat
aatgaggtcctgagattcagtttggacagtcaagttaaccacagaatgaaaaaagactta
ccgtctcatgttcaggagatgcacaaaagaaaggaatttctagatcgtcaacttgatgaa
ctttcccgccagcgtgctttatgccgaggtggaagggaatcgcagaggcaagaattagat
ggaaaaattgccagagtttcaaaagaaaggcaggagcttgcttctaaaattaaagaggtt
caaggacgcccacagaagacccagagcatcatcatcctggagtcgcacgtcatctgctgc
acgctgagcaccagcggcggcttgctgctcgaggcggccttccgcgggcaggggggcgtc
cccttcagctgcgttatcgttgatgaggctggacagtcctgtgaagttgaaacccttact
cctctgatccatcgttgcaacaagcttgtcctggtaggagaccctaagcagctccctccc
acagtcatttccgtgaaggcacaggactatggctatgaccagtcgatgatggcccgcttc
cacaagctcctagaggagagtgtggaacacaacatgattggcaggctgcccgtcttacag
ctcaccatccagtacaggatgcacccagacatatgtctcttcccttctagttacatttat
gacggaaccttgaaaacaaatagagggacagagactagtcggtgctcgtctgactggcca
tttcaaccctacctcgtgtttgatgttggagatggctcggaaagacgggataatgactca
tatgtaaatgttcaagagataaaactggtaatggaactaattaaacttattaaagacaaa
agaagggacattaatttccgaaacattggcataataacccattacaaggctcagaagacg
atgattcagaaggatttggacaaagagtttgatagaaaaggggcagcagaagtagatacc
gtggatgccttccagggtcgtcagaaagactgtgttattgttacatgcgtcagagcaagt
gccacacaaggctcaattggatttctggcaagtttgcagagattgaatgtcaccatcaca
cgagccaagtacagcctcttcatcctgggacacttgagaaccctagtggaaaatcggcat
tggtatcacctgattcaagatgcacagaagcgtggagccattattaagacttgcgacaag
aactacagacacgatgtgatgaagatcctgaagctcaaaccattgcttcaaaggagcctt
actcaccctcctactgttgctccagaggcatacagaccccagggtggcctacccagcagc
aagcaagatagtgaactcagcaagacatcttttgcttcttccctgtaccactcaccttct
gattccaaagaagccacagtcactgatgctgcaaaggatcctgaaaggccacccaatcag
gaccggcttcgggacccgagactgctgcggaggctgggcttggcctttgatgcccaagga
ataaacctcagggagccgcagcccttgagcccccagcattccggagcagcgcctcctttg
ggagcaccaggctgccctgggagtccccaggagccgtgcaccatcgggcagcagggagtt
accctgaacaaccacacacctcacatgcagtgcgactctccagctgctagtactgacact
tccacaagcaaagagaagtgtgaccaggaagagggggtgctcggccacaggagagagacc
agggccttgagtgaaggggatcaggagtggtgggcgagctcccacacaaagaggaactca
gactgggacgaggggggcctggaggaggacagcagctcgaagaagagacgggttttataa
DBGET
integrated database retrieval system
