Odocoileus virginianus (white-tailed deer): 110149806
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Entry
110149806 CDS
T10722
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110149806 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovr03019
]
110149806 (SMG5)
03032 DNA replication proteins [BR:
ovr03032
]
110149806 (SMG5)
Messenger RNA biogenesis [BR:
ovr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
110149806 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
110149806 (SMG5)
DNA replication proteins [BR:
ovr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
110149806 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
110149806
NCBI-ProteinID:
XP_020768139
UniProt:
A0A6J0Z386
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All DBs
Position
5:complement(12783191..12810186)
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AA seq
1016 aa
AA seq
DB search
MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGD
LSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
SEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRCKDIKRLLVNFMYLQSLLQP
KSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMVI
ICLMGVHSLKRAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
PESKETLEKEEEPGPEPPPVVPPEGEVRKSRKFSRLSCLRRRRHPPKAGDDSDLSEGFDS
DSSHDSTRASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEDEDGTRSPALE
PSRARSEAPESLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPTTEAPT
STSLRRCVNGDVDKPSEPASEEGSESEGSESSGRSFRNERSIQEKLQVLMAEGLLPAVKV
FLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAASELQESGLALCPEVQELLEGCELP
DLPSSLLLPEDMALRNLPPFRAAHRRFNFDTDRLLLSTLEETVVRICCIRSFGHFVARLQ
GSILQFNAEVGIFVSIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQL
EGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHP
GARDGIRYLEAEFKKGNRYIRCQREAGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQG
AGEEDPSGMVTIITGLPLDNPSTLSGAMQAALQAAVHASVDIKNVLDFYKQWKEIG
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggcccccccacaggggagagcagtgagcccgaagcaaaggtcctccacact
aagcggctttaccgggctgtggtggaggctgtgcatcgacttgacctcatcctttgcaac
aaaaccgcttatcaagaagtgttcaaaccggagaacattagcctgaggaacaagctgcgt
gagctctgcgtcaagcttatgttcctgcacccagtggactatgggaggaaggctgaggag
ctgctgtggagaaaggtatattacgaagttatccagcttatcaagactaacaaaaagcat
atccacagccggagtaccttggaatgtgcctacaggacacacctggttgctggtattggc
ttctaccagcatctccttctctatatccagtctcactaccagctggaactgcaatgctgc
atcgactggacccatgtcaccgaccccctcataggatgcaagaagccggtgtctgcctca
gggaaggagatggactgggcacagatggcatgccaccgatgtctggtgtacctgggggac
ttgtcacgttatcagaatgaactagctggtgtagacactgagctgctagctgagagattt
tactaccaagccctgtcagtagctcctcagattggaatgcccttcaaccagctgggcacc
cttgcaggcagcaagtactataatgtggaagccatgtactgctacctgcgctgcatccag
tcggaagtgtcctttgagggggcctatggaaacctcaagcggctgtatgacaaggcagcg
aaaatgtaccaccagctgaagaagtgtgagactcggaaactctctcccagcaagaagcga
tgtaaagacattaagaggttgctggtgaactttatgtatctgcaaagcctcctgcagccc
aaaagcagctccgtggactcagagctgacgtcactttgccaatcagtcctggaggacttc
aacctctgtctcttctacttgccctcctcacccaacctcagcctggccagtgaggatgag
gaggagtatgagagtggatatgccttcctcccggaccttctcatctttcaaatggtcatc
atctgccttatgggggtgcacagcttgaagagagcaggatccaagcagtacagtgcagcc
attgccttcaccctggccctcttctcccacctcgtcaatcacgtcaacatccggctgcaa
gctgagctggaagagggcgagaatcccgtcccagcattccagagcgatggcacagatgag
ccagagtccaaggaaaccttggagaaggaggaggagccgggtcctgagccccctcctgta
gtacctccagagggtgaggtcagaaagagtcggaagttctcccgcctctcctgcctccgc
cgccgccgccacccacccaaagcaggtgatgacagtgacctgagcgaaggctttgactcg
gattcaagccatgactcgacccgggccagtgagggctcagacagtggctccgacaagagt
cttgaaggtgggggaacagcctttgacgctgagacagattcagaaatgaacagtcaagag
tcccgatcagacctggaagatatggaggatgaggacgggacacggtccccagccctggag
ccatctcgggccaggtcagaggctcctgaatccctcaatggccctctgggccccagcgag
gccagcattgccagcaatctacaagccatgtccacccagatgttccagaccaaacgctgc
ttccgactggcccccaccttcagcaacctgcttctccagcccaccactgaagcgcccacc
tcgaccagcctcaggcgctgtgtcaatggagatgtggacaagccgtcagagccagcctct
gaagagggctcggagtcggagggaagtgagtccagtgggcgctcctttcggaatgagcgg
agcatccaggagaagctgcaggtcttgatggccgaaggcctgctccctgctgtgaaagtc
ttcctggactggctgcggaccaaccccgacctcatcattgtgtgtgcgcagagctctcaa
agtctgtggaaccgcctgtctgtgttgctgaatctgttgccagctgccagcgaacttcaa
gaatctggcctggccctgtgtcctgaagtccaggagcttcttgaaggttgtgaactgcct
gacctcccatctagcctgctgctcccagaggacatggcacttcgcaacctgcctcccttc
cgggcggcccacagacgctttaactttgacacagatcggctcttgctcagcaccttagag
gagacagtcgtgcgtatctgctgcatacgcagctttggccactttgttgcccgcctgcaa
ggcagcatcctgcagttcaacgcagaggtcggcatctttgtcagcattgcccagtccgag
caggagagcctgctgcagcaggcccaggcccagttccgcatggcacaggaggaagcgcgg
cggaacaggctgatgagagacatggcccagctacgacttcagctcgaggtctctcagctg
gaagggagcctgcagcagcccaaggcacagtcagcaatgtctccctacctcgtccccgac
acccaggccctctgccaccacctccctgtcatccgtcagctggccaccagtggccgcttc
atcgtcatcatcccaaggacagtgatcgatggcctggatttgctgaagaaggagcaccca
ggggcccgggatgggatccgatatctggaggcagagtttaaaaaagggaacaggtacatt
cgctgccagagagaggcggggaagagcttcgagcggcataagctgaagaggcaggatgct
gatgcctggacgctctataagatcctggacagctgcaaacagctgactctagcccagggg
gcaggtgaggaggacccgagtggcatggtgaccatcatcacaggccttccactggacaac
cctagcacgctctcaggcgctatgcaggcagccttgcaggccgctgtacatgccagtgtg
gacatcaagaatgttctggacttctacaagcagtggaaggagattggctga
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integrated database retrieval system
