Odocoileus virginianus (white-tailed deer): 110149870
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Entry
110149870 CDS
T10722
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03082
ATP-dependent chromatin remodeling
ovr04714
Thermogenesis
ovr05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110149870 (ARID1B)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110149870 (ARID1B)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110149870 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ovr03000
]
110149870 (ARID1B)
03021 Transcription machinery [BR:
ovr03021
]
110149870 (ARID1B)
03036 Chromosome and associated proteins [BR:
ovr03036
]
110149870 (ARID1B)
Transcription factors [BR:
ovr03000
]
Eukaryotic type
Helix-turn-helix
ARID
110149870 (ARID1B)
Transcription machinery [BR:
ovr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110149870 (ARID1B)
Chromosome and associated proteins [BR:
ovr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110149870 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
110149870
NCBI-ProteinID:
XP_070317738
LinkDB
All DBs
Position
34:complement(9779507..10191839)
Genome browser
AA seq
2416 aa
AA seq
DB search
MAARAAAAARAGSGERRAPPGPRPAPGARDLEAGARGAAAPGPMLGGGDGSGLNNVHHHP
LQPRHDLNMAHNASAAAAAAASTNSAKSGGSEAEGGSAAALSSSSSSSSAAAAAASSSSS
SSGPGSAMETGLLPNHKLNTVGEAAAAAPHQQQHLHHHHHRAHHLQHLHHHAHHLHHHAL
QQQLSQFQQQQQQPQRQQHQHPISNNSSLGGAGGGTPQPGADMEQPQHGGAKDGAAAGSQ
AEPPGQPLLSKPGDEDDAPPKMGEPAGGRFEQPGLGAQQQQQPPPPVAVPGGGGGGGGPA
AVSEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGLMHSASAAAGAPNSMDPLQNS
HEGYPNSQYNHYPGYSRPGAGGGGGGGGGGGGGGGGGGSGGGGGAGGAGAVAAAAAAAAA
AAAAGGGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGAAAAAAAAGG
FQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSPSAPPPPPPPSQPQSQAAA
AAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQG
SPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPIGIQGRPPGAMGGLQY
PQQQMPPQYGQQGVSGYCQQGQQPYYNQQPQPPHLPPQAPYLPSQSQQRYQPQQDMSQEG
YGTRSQPPLASGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSS
QGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQP
PGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGI
SSFQQSNSSGTYGPQMSQYGPQGNYSRPPTYSGVPSASYSGPGPGMGVNANSQMHGQGPS
QPCGSMPLGRVPSAGMQNRPFPGNMSSMTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAA
VMQAAANSAQSRPPYIRSPAYPSQSGAGGRPMFSSQHPNYGNSQAPMMHQPDQYGQGGFP
GMNQSGLMASSSPYSQPMNNSSGLMNTQAPPYSMTPNMVNSSTASMGLADMMSPSESKLP
LPLKADGKEEGSAQPEGKSKDSYSSQGISQPPTPGNLPVPSPMSPSSASISSFHGDESDS
ISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPA
VGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF
ECKIERGEEPPPEVFSTGDTKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKP
PTPASTPHGQMTPMQGGRSSTVSVHDPFSDASESSFPKRNSMTPSTPYQQGMSMPDVMGR
MPYEPNKDPFGGMRKVPGSSEPFMTQGQMPTSSMQDMYNQSPSGAMSSLGMGPRQQFPYG
ASYDRRHEPYGQQYPGQGPPSGQPSYAGHQPGLYPQQTNYKRHMDGMYGPPAKRHEGDMY
NMQYGSQQQEMYNQYGSSYSGPDRRPLQGQYPYPYSRERMQGPGQIQPHAIPPQMMGGPM
QSSSGEGPQQSMWATRNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQRINHESQW
PSHVSQRQPYMSSSASMQPITRPPQSSYQTPPSLPNHISRAPSPASFQRSLESRMSPSKS
PFLPSMKMQKVMPTVPTSQVTGPPPQPPPIRREITFPPGSVEASQPVLKQRRKITSKDIV
TPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCLI
DIFGILMEYEVGDPSQKALDHNAAKRDDNQSLADDSGREEEDAECIEEEEDEEDEEEEDS
GRAETEDRSSTGASPDATADPKEKPRQASKFDKLPIKIVKKNNLFVVDRSDKLGRVQEFS
SGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPPLSSTGRKKDQEGKGDSDEHQEKSI
IATIDDVLSARPGALPEDTNPGTQTESSKFPFGIHQAKSHRNIKLLEDEPRSRDEAPLCT
IAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQ
TYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLL
HWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFYA
TLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAIAVQKGSIGNLISFLEDGVTMAQYQ
QSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNS
LVASVICDVLFQIGQL
NT seq
7251 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgggcagcagcagcagcgcgggcgggcagcggcgagcggcgggcgcccccc
gggccgcggccggcgcccggggcccgggacctggaggcgggggcgcgcggcgcggcggcc
ccgggacccatgctggggggcggcgacggcagcggcctgaataatgtgcaccaccacccc
ctgcaaccccgtcacgatctgaacatggcccataacgcgagcgccgcggccgcggccgcc
gccagcactaacagcgccaagagcggcggctccgaggcggagggtggaagcgccgccgcg
ctgtcctcctcctcctcctcctcctccgccgcggcggcggcggcgtcctcctcttcctcc
tcgtcgggcccgggctcggccatggagacggggctgctccccaaccacaaactgaacacc
gttggcgaagccgccgccgcagcgccccaccagcagcagcacctccaccaccaccaccac
cgtgcccaccacctccagcacctccaccaccatgcccaccacctccaccaccacgcacta
cagcagcagctaagtcagttccagcagcagcagcagcaaccacagcggcagcagcaccaa
catcccatttccaacaacagcagcctcggcggcgcgggcggcggcacgcctcagcccggt
gccgacatggagcagccgcaacatggaggtgccaaggacggtgctgccgcgggcagccag
gccgaacccccgggccagccgctgctgagcaagccgggcgacgaggacgacgcgccgccc
aagatgggggagccggcgggcggccggttcgagcagccgggcctgggcgcgcagcagcag
cagcagccgccgccgccggtcgccgtgcccgggggcggcggaggcggcggcggcccggcg
gccgtctcggagtttaataattactatggcagcgctgccccagctagcggcggccccggc
ggccgcgctgggccttgctttgatcaacatggcggacaacaaagccccgggatggggctg
atgcactccgcctcagctgccgccggagcccccaacagcatggaccccctgcagaactcc
cacgaagggtaccccaacagccagtacaaccattatccgggctacagccggcccggcgcg
ggcggcggcggcggaggaggcggaggcggaggcggaggaggaggaggaggcggcagcgga
ggaggaggaggagcgggaggagcgggagctgtggcggcggcggccgcggcggcggcggca
gcagcagcagcaggaggcggcggcggcggcggctatgggggctcgtcctcggggtacggg
gtgctgagctccccccggcagcagggcggcggcatgatgatgggccccgggggcggcggg
gccgcgagcctcagcaaggcggccgccggcgcggcggcggcggcggcggcggcggggggc
ttccagcgcttcgccgggcagaaccagcacccgtcgggggccaccccgaccctcaaccag
ctgctcacctcgccaagccccatgatgaggagctacggcggcagctacccggactacagc
agccccagcgcgccgccgccgccgccgccgccgtcgcagccccagtcccaggcggcggca
gcagcggcggcggcgggggcggcggcgggcggccagcaggcggccgcgggcatgggcttg
ggcaaggacatgggcgcccagtacgccgctgccagcccggcctgggcggccgcgcaacaa
aggagccacccggcgatgagccccggaacccccggcccgaccatgggcagatcccagggc
agcccaatggatcccatggtgatgaagagaccccagctgtatggcatgggcagtaaccct
cattctcagccacagcagagcagcccttacccgggaggttcctacggccccccaggccca
cagcggtatccgatcggcattcaaggccggccccccggggccatgggaggcctgcagtac
ccccagcagcagatgccacctcagtacggacagcagggtgtgagcggttactgccagcag
ggccagcagccttactacaaccagcagccacagcctccgcaccttcccccgcaggcgccc
tacctgccctcccagtcccagcagaggtaccagccgcagcaggatatgtctcaggaaggc
tatggaactaggtctcaacctcctctggcttctggaaaacctaaccatgaagacttgaac
ttaattcaacaagaaagaccatcgagtttaccagacctgtctggctccattgatgacctc
cccacgggaacggaagcaactttgagctcagcagtcagtgcatccgggtccacgagcagc
caaggagatcagagcaacccagctcagtcgcctttctctccacatgcatctccccatctc
tccagcatccctgggggcccatcgccttctcctgtcggctctcctgtaggaagcaaccag
tcacgatctggcccaatttctcctgcaagtattccaggaagtcagatgccccctcagcca
cctgggagccagtcagaatccagttctcatcctgccttgagccagtcaccaatgccacag
gaaagaggttttatggcaggcacacaaagaaaccctcagatgtctcaatatggacctcag
cagacaggaccatccatgtcgcctcatccttctcctggaggccagatgcaccctggaatc
agtagctttcagcagagtaactcaagtgggacttacggtccacagatgagccagtatgga
ccacaaggtaactactccagacccccaacatacagtggggtgcccagtgcaagctacagc
ggcccagggcccggcatgggtgtcaatgccaacagccagatgcatggacaagggccaagc
cagccatgtggctccatgcccctgggacgagtgccatccgcaggcatgcagaacagacca
tttcctggaaacatgagcagcatgacccccagttctcctggcatgtctcagcaggggggt
ccaggaatggggccaccaatgccaaccgtgaaccgtaaggcacaggaggcagctgccgca
gtgatgcaggccgctgcgaactcggcgcaaagcaggccaccatacattaggtcgcctgct
tatcccagccagtctggggctggcggacgccccatgttttcttcccagcaccccaactat
ggcaactctcaggctcccatgatgcaccagcctgaccagtacgggcaaggcggctttccc
ggcatgaatcagagtggactcatggcttccagctcgccctacagccagcccatgaacaac
agctctgggctgatgaacacccaggcgcccccctacagcatgacgcccaatatggtgaac
agctcaacagcatctatgggtcttgcagatatgatgtctcctagtgaatccaaactgccc
ctgcctctcaaagccgacggtaaagaagaaggcagtgcacagccggagggcaagtcgaag
gatagctacagctctcagggtatttctcagcccccaacccccggcaacctgccagtccct
tccccaatgtcccccagctccgctagcatctcctcatttcatggagatgaaagtgatagc
attagcagcccaggctggccaaagactccatcaagccctaagtccagctcatccaccacc
actggggaaaagatcacaaaggtgtatgagctagggaatgagccagagaggaagctgtgg
gtggaccgctacctcaccttcatggaggagaggggctccccagtctcaagtctgcctgcg
gtgggcaagaagcccttggacctgttcagactctatgtctgcgtcaaagagatcggaggt
ttggcacaggttaataaaaacaagaagtggcgtgagctggcaaccaacctaaatgttggc
acttcgagcagtgcagcgagctccctgaaaaagcagtatattcagtacctgtttgccttt
gagtgcaagatcgagcggggggaggagcccccgccggaagtcttcagcacgggagacacc
aagaagcagcccaagctccagccgccatctcctgctaactcaggatccttgcaaggtcca
cagaccccccagtcaactggcagtaattcaatggcagaggttccaggtgacctgaagcca
cctactccagcctccacccctcatggacagatgaccccgatgcaaggtggaagaagcagc
accgtcagtgtgcacgacccattctcagacgcaagtgagtcatcgttccccaaacgcaac
tccatgactcccagcaccccgtaccagcagggcatgagcatgccagacgtgatgggcagg
atgccctacgagcccaacaaggacccctttggagggatgcggaaagtgcctggaagcagc
gagcctttcatgacgcaaggacagatgcccacgagcagcatgcaggatatgtacaaccag
agtccatctggggccatgtctagtctgggcatggggccgcggcagcagtttccctacgga
gccagttatgaccgaaggcatgaaccttacgggcagcagtacccaggccaaggccctccc
tcaggacagccgtcatatgcaggacaccagccgggcctgtacccacagcagacgaactac
aagcgccatatggatggcatgtacgggcctccagccaaacgccacgagggagacatgtac
aacatgcagtatggcagccagcagcaggagatgtacaaccagtacgggagctcctactcc
ggcccagaccggaggcccctgcaggggcagtatccgtacccctacagccgagagaggatg
cagggcccagggcagatacagccgcacgccatcccgccgcagatgatgggcggccccatg
cagtcgtcctccggcgaagggcctcagcagagcatgtgggcaacccgcaacgatatgcct
tacccctaccagaacaggcaaggcccgggcggccccgcgcaggccccgccttaccccggc
atgaaccgcaccgatgacatgatggtccctgatcagaggataaaccacgagagccagtgg
ccttcccacgtcagccagcgtcagccttacatgtcctcctcagcctccatgcagcccatc
acgcgcccgcctcagtcgtcctaccagacaccaccctcactgccaaaccacatctccagg
gcacccagccccgcctccttccagcgctccctggagagccgcatgtctcccagcaagtcc
cccttcctcccctccatgaagatgcagaaggtgatgcccaccgtccccacgtcccaggtc
actgggccgcccccccaaccgccccccatcagaagggaaatcaccttccctcctggctct
gtggaagcctcacagccagtcctgaaacaaaggcggaagattacctcaaaagatattgtt
actccagaggcctggcgtgtgatgatgtcccttaagtcaggtcttttggctgaaagtact
tgggctttggacactattaatattcttctatatgatgacagcactgttgctactttcaat
ctctcccagttgtccggatttcttgaacttttagtagagtacttcaggaaatgcctgatt
gacatttttggaattcttatggaatatgaagtgggagaccccagccaaaaagcacttgat
cacaatgcagcgaagagagacgacaaccagtcattggccgacgattctgggagagaggaa
gaagatgctgaatgtattgaggaggaggaagacgaagaggatgaggaggaggaagacagc
gggagggcggagacggaggacaggagcagcactggggcctcccctgacgccaccgcagat
ccaaaggagaagcccaggcaagccagtaaatttgacaagctgccaatcaagatagtcaaa
aagaacaacctgtttgtcgtcgaccgctctgacaagctgggtcgcgtccaggagttcagc
agtggacttctgcactggcagctcggcgggggggacaccaccgagcacatccagactcac
ttcgagagcaagatggagattcctcctcgcaggcggccacctccccctttgagctccaca
ggcagaaagaaagaccaggaaggcaaaggggattctgacgagcaccaagagaaaagcatc
atcgcaaccatcgatgatgttctgtctgcgcggccaggggctctgcctgaagacacaaac
cctggtacccagaccgaaagcagcaagtttccctttggaatccatcaagccaaaagtcac
cgcaacatcaagctgctggaggacgagccgaggagccgggacgaggccccgctctgcacc
atcgcgcactggcaggactcgctggccaagcgctgcatctgcgtgtccaatatcgtccgg
agcttgtcttttgtgcctgggaatgatgcagaaatgtccaaacacccaggcctggtgctg
atcctggggaagctgattcttcttcaccacgagcatcccgagagaaaacgagcgccgcag
acctacgagaaggaggaagacgaggacaaaggggtggcctgcagcaaagatgagtggtgg
tgggactgcctcgaggtcttaagggataacacattggtcaccttggccaacatttctggg
cagctagacttgtctgcttacacggaaagcatctgcttgccaattttggatggcttgctg
cactggatggtgtgcccatcagcagaggcacaagacccctttcccacagtgggacccaac
tctgtcctgtcgcctcagagactcgtgctggagacgctctgtaaactcagcatccaggac
aacaatgtggacctgatcttggccacgcctccatttagtcgtcaggagaaattctatgcc
acgttagttaggtacgttggggatcgcaaaaacccagtctgtcgagaaatgtccatggct
cttttatcgaaccttgcccaaggggatgcgctggctgcaagggccatagctgtgcagaag
ggaagcatcggaaacttgataagcttcctagaggatggggtcacgatggcccagtatcag
cagagccagcacaacctcatgcacatgcagcccccgcccctagagccccctagcgtggac
atgatgtgcagggcggccaaggctctgctggccatggccagagtggacgagaaccgctcc
gagttccttctgcacgagggccgattgctggatatctcgatatcagccgttctgaactct
ctggtggcgtctgtcatctgcgatgtactgtttcagatcgggcagttatga
DBGET
integrated database retrieval system
