KEGG   Odocoileus virginianus (white-tailed deer): 110150500
Entry
110150500         CDS       T10722                                 
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
ovr  Odocoileus virginianus (white-tailed deer)
Pathway
ovr04151  PI3K-Akt signaling pathway
ovr04382  Cornified envelope formation
ovr04510  Focal adhesion
ovr04512  ECM-receptor interaction
ovr04518  Integrin signaling
ovr04820  Cytoskeleton in muscle cells
ovr04926  Relaxin signaling pathway
ovr04933  AGE-RAGE signaling pathway in diabetic complications
ovr04974  Protein digestion and absorption
ovr05146  Amoebiasis
ovr05165  Human papillomavirus infection
ovr05200  Pathways in cancer
ovr05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:ovr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    110150500 (COL4A1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    110150500 (COL4A1)
   04518 Integrin signaling
    110150500 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    110150500 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    110150500 (COL4A1)
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    110150500 (COL4A1)
  09154 Digestive system
   04974 Protein digestion and absorption
    110150500 (COL4A1)
  09158 Development and regeneration
   04382 Cornified envelope formation
    110150500 (COL4A1)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    110150500 (COL4A1)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    110150500 (COL4A1)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    110150500 (COL4A1)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    110150500 (COL4A1)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    110150500 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ovr04147]
    110150500 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:ovr00536]
    110150500 (COL4A1)
Exosome [BR:ovr04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   110150500 (COL4A1)
Glycosaminoglycan binding proteins [BR:ovr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   110150500 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 110150500
NCBI-ProteinID: XP_070327515
UniProt: A0ABM4II71
LinkDB
Position
8:25855895..25988284
AA seq 1668 aa
MGPRLGVWLLLLAALLLHEESSRAAAKGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVIG
FPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPLGVPGYPGNPGLPGIPGQDGPPGPPG
IPGCNGTKGERGPVGPPGLPGFAGNPGPPGLPGMKGDPGEILGYIPGTLLVGERGFPGQT
GAPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGEKGDQGVSGPPG
LPGQAQVITKGDTAMRGEKGQKGEPGFQGMPGIGEKGEPGKPGPRGKPGKDGEKGEKGSP
GFPGDSGYPGQPGREGLKGQKGEAGPPGLPGTVIGTGPLGEKGEPGYPGGPGAKGETGPK
GFPGIPGQPGPPGFPTPGLIGAPGFPGDRGEKGEPGLPGVSLPGPSGRDGLPGPPGPPGP
PGQPGHTNGIVECQPGPPGDQGPPGIPGQPGLTGEVGEKGQKGDSCLVCDTTELRGPPGP
QGPPGEIGFPGQPGAKGDRGLPGRDGLEGVPGPQGSPGLMGQPGAKGEPGEIYFDIRLKG
DKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDIG
PPGPPGFGPIGPIGDKGQMGFPGNPGAPGQPGPKGEAGKVVPLPGPPGAEGLPGSPGFQG
PQGDRGFPGSPGRPGLPGEKGAIGQPGIGFPGPPGPKGVDGLPGDAGPPGNPGRQGFNGL
PGNPGPPGQKGEPGVGLPGLKGLPGIPGIPGTPGEKGSVGGPGVPGEHGAIGPPGLQGLR
GDPGPPGLQGPKGAPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPGP
KGDKGSQGLPGLTGQSGLPGLPGQQGTPGQPGFPGPKGEMGVMGTPGQPGSPGPAGVPGL
PGAKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGEKGDQGEKGQTGP
TGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPGPKGSTGGMGLPGM
PGPKGVAGIPGPQGIPGLPGDKGAKGEKGQAGLPGIGIPGRPGDKGDQGLSGFPGSPGEK
GEKGSTGIPGMPGSPGPKGSPGGVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGKP
GPTGPAGQKGEPGSDGIPGSVGEKGEPGLPGRGFPGFPGSKGEKGSKGDVGFPGLAGSPG
IPGSKGEQGFMGPPGPQGQPGLPGTPGHAVEGPKGDRGPQGQPGLPGHPGPMGPPGLPGL
DGLKGDKGNPGWPGTPGAPGPKGDPGFQGMPGIGGSPGITGAKGDMGLPGVPGFQGQKGL
PGLQGVKGDQGDQGFPGTKGLPGPPGPPGPFDIIKGEPGLPGPEGPAGLKGLQGPPGPKG
QQGVTGSVGLPGPPGEPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTPS
VDHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP
FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDSIRPFISRCAVCEAPAMVMAVH
SQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT
CNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHISRCQVCMRRT
NT seq 5007 nt   +upstreamnt  +downstreamnt
atggggccccggctcggcgtctggctgctgctgctcgccgcgctcctgctccacgaggag
agcagccgggccgccgcgaagggtgggtgtgccggctctggctgcgggaagtgtgactgc
cacggcgtgaaaggacaaaagggagaaagaggcctcccggggttacaaggggtcatcggg
tttccaggaatgcaaggacccgaggggccgcaggggccaccaggacaaaagggtgacacc
ggcgagcccggactgcccggcactaaagggaccaggggacccttgggagtgcctggctac
cctggaaacccgggacttcctggtattcctggccaggatggccctccgggtcccccaggt
attccaggatgcaacgggacaaagggtgagagagggcccgtggggcctcccggtttgcct
ggatttgccggaaatcccggaccaccagggttaccgggaatgaagggagatccaggtgag
attctgggctatataccagggaccctgctggtaggcgaaagaggctttcctggacagacg
ggagcacctggctcaccaggtctgccaggacttcaaggccccgtcggccccccgggattc
actgggccaccaggtcctccaggccctcctggccctccaggtgaaaaggggcaaatgggc
ttgagctttcaagggccaaaaggtgaaaagggtgatcaaggggtgagcgggcccccagga
ttaccaggacaggctcaagtcatcacgaaaggagacacagccatgcggggcgagaagggt
caaaaaggtgaacctggatttcaggggatgccaggcattggagagaaaggagaacctgga
aaaccagggccccgcggaaaaccaggaaaagatggtgaaaaaggagaaaaagggagtcca
gggtttccgggcgattcgggatacccaggacagccaggccgagagggtttaaagggacag
aaaggtgaagcaggtcctcccgggctgcctggaactgtgattggcacgggacccttggga
gagaaaggagagcctgggtacccagggggtccaggggcgaaaggggagacaggtcccaaa
ggtttcccgggaataccaggccagccaggccctccaggtttcccgactccggggctgatc
ggtgcccccggcttccccggtgacagaggagagaagggtgaaccgggcttgccgggcgtg
tcgctgccgggacccagtggaagggacgggcttcccggcccccctggcccccccgggccc
cctgggcagccgggccacacaaacggaatcgtggaatgccagcccgggccgccaggtgat
cagggtccccccggaattccagggcagccggggttgacgggcgaagttggagaaaaaggt
caaaaaggagacagttgcctcgtctgtgacacaacagagcttcgtgggcccccagggcca
cagggaccccccggagaaataggtttcccaggacagccaggggccaagggtgacagaggc
ttgcccggcagggatggtctggaaggagtgcctggtccgcaaggttccccggggctcatg
ggccagccgggagccaagggggagcccggcgagatctacttcgacatacggctcaagggc
gacaaaggagaccccggcttcccaggccagcccggcatgccaggcagagcgggatcccct
ggaagagacggccacccgggtctgcccggccccaaaggctccccgggttcagtaggattg
aaaggggagcgtggccccccaggaggcgtcggattccctgggagccgtggcgacatcggc
cctccggggcctccaggcttcggcccgattggccccattggtgacaaaggacagatgggc
ttcccaggaaaccccggggccccaggccagccaggtcccaagggagaggcaggaaaagtc
gtgcccttgcccggcccccctggagcagaaggacttcccgggtccccaggcttccaggga
ccacaaggtgaccgaggttttcctggaagccccggaaggccgggcctccccggagagaag
ggcgccatcggccagcctgggattggatttccagggcctcctggccccaaaggcgtggat
ggtttacctggagacgctgggcctcctgggaatccgggtcgccaaggcttcaacggctta
cctggcaaccccggtccgcctggccagaagggagagcctggagtcggtctgccgggactc
aaaggcctgcctgggataccgggcatccccggcacccccggggagaagggaagcgtcgga
ggaccgggagttcctggagagcacggcgctatcggcccccccggcctccaggggctcaga
ggtgacccgggacctcctggattgcaaggccccaaaggagctccgggagtccccggaatc
ggcccccctggagcaatgggcccccccggaggacagggacccccagggtcatcaggtccc
cccggagtgaaaggagagaaaggcttccccggcttcccaggcctggacatgccaggcccc
aaaggagacaaagggtcccaggggctcccaggcctgacggggcagtcggggctgcctggc
cttcctggacagcagggcacccccggccagcctggctttccaggtcccaagggagagatg
ggcgtcatggggaccccggggcagcccggctcgccaggaccagcaggcgtgccaggattg
ccgggtgccaaaggggaccacggcttccctggctcttcaggacccaggggagaccctggc
ttcaagggtgacaaaggcgacgtggggctccctggcaagcccggctccatggataaggtg
gacatgggcagcatgaagggcgagaagggagaccaaggcgagaaaggacaaactggtccg
accggcgataaaggatcccggggagacccaggaacgccaggcgtgcctggaaaggacggt
caggcaggacaccccgggcagccaggacctaaaggtgatccaggtgtgagtgggatccca
ggcgctccgggacttcctggccccaaaggatccactggtggaatgggcctaccaggaatg
ccaggaccaaaaggtgtggctggcatccccggcccgcagggcattcctggcttacctgga
gacaagggggcaaaaggagagaaagggcaggcgggtctgcctggcattgggattccagga
cggcccggggacaagggagaccagggcttatcaggatttccgggaagccccggcgagaag
ggagagaaaggaagcactgggatcccagggatgcccgggtcgccgggccccaaaggctcc
ccgggcggtgttggctatccaggaagccctgggttgcctggagagaaaggtgacaaaggc
ctcccgggactggatggcattcctggcatcaaaggagaagcaggtcttcctgggaagcct
ggccccacgggcccagctggccagaaaggggagcccggcagcgatggaatcccagggtcg
gtgggagagaagggcgagccaggtctgcctggaagaggattcccagggtttccagggagc
aaaggagagaaaggttcaaagggtgacgtgggcttcccaggattagccgggagcccagga
attcctggatccaaaggagaacaaggcttcatgggtcccccgggaccacagggacagccg
ggattgccagggaccccaggccacgcggtagaggggcccaaaggagaccgcggcccgcaa
ggacaacccggcctgccagggcatccgggacccatggggcctccaggcctccccgggctc
gatgggctgaaaggtgacaaggggaacccaggctggccgggcactccaggagcaccaggg
cccaagggagacccaggattccagggcatgccgggcattggcggctctccaggaatcaca
ggagccaagggtgatatgggacttccaggagttccagggtttcaaggtcagaaaggcctc
cccggcctgcagggagttaaaggtgaccaaggagaccaaggcttcccgggaactaaaggt
cttcccggccccccgggtcccccaggtccgttcgacatcatcaagggggaaccagggctc
cctgggcccgagggccccgcgggtttgaaagggcttcagggacccccgggcccgaaagga
cagcaaggtgtgacgggatccgtgggcttacctgggcccccgggtgagcctggctttgac
ggcgcccccggccagaagggagagaccgggcccttcggccctcccggtccacgaggcttc
ccgggtccgcccgggcctgacgggctgccgggatccatgggtcccccgggcaccccatcc
gtcgatcatggcttccttgtgacccggcacagtcagacgacagacgacccccagtgtcct
cctgggaccaaaatcctctaccacgggtactctctgctctacgtgcaaggcaacgagcgg
gcgcacggccaggacctgggcacggcgggcagctgcctgcgcaagttcagcaccatgccc
ttcctcttctgtaacatcaacaacgtctgcaacttcgcctcccgcaacgactactcctac
tggctgtccaccccggagcccatgcccatgtccatggctcccatcaccggggacagcatc
cggcccttcatcagcaggtgcgcggtgtgtgaggctccggccatggtgatggccgtgcac
agccagaccatccagattccccagtgccccaccggctggtcctcgctctggatcggctac
tcctttgtgatgcacaccagcgccggggctgaaggctctggccaggccctcgcctcccct
ggctcgtgtctggaggagttcagaagcgcccccttcatcgagtgccacggccgcggaact
tgcaattactatgccaacgcttacagcttttggctcgctacgatagagcggagcgagatg
ttcaagaagcccacgccgtccacgctgaaggccggggagctgcgcacgcacatcagccgc
tgccaagtatgcatgcggaggacatag

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