Odocoileus virginianus (white-tailed deer): 110152507
Help
Entry
110152507 CDS
T10722
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110152507 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovr03019
]
110152507 (XAB2)
03041 Spliceosome [BR:
ovr03041
]
110152507 (XAB2)
Messenger RNA biogenesis [BR:
ovr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110152507 (XAB2)
Spliceosome [BR:
ovr03041
]
Complex B
Other components
Prp19-related factors
110152507 (XAB2)
Complex C
110152507 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
110152507
NCBI-ProteinID:
XP_020771943
UniProt:
A0A6J0ZD36
LinkDB
All DBs
Position
3:complement(14409617..14418490)
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggctctcgaggcccgagcggccggaccttgtcttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctctgtcaagtgctggctccgc
tatatcgagttcaagcagggggcccccaagcccaggctcaatcaactgtatgagcgggcg
ctcaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcccgccgggca
caggtgaagcatcgctgtgtgactgaccccgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccccggctgtggctggattactgccagttccta
atggaccagggacgtgtcacgcacacgcgccgaactttcgaccgggccctccgggcattg
cctattacccagcactctcgtatttggccactgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgctgtgcggggctaccggcgcttcctcaagctgagccctgaaagtgct
gaggagtatatcgagtacctcaagtcaagcgaccggctggatgaggcggcacagcgcctg
gccaccgtagtgaacgatgaacgcttcgtgtcaaaggccggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaaccctgacaaggtgcagtctctcaacgtg
gacgccatcatccgcgggggtctcacccgcttcaccgaccagctgggcaagctctggtgc
tcgctggccgactactacatccgtagcggtcacttcgagaaggctcgggacgtgtatgag
gaggccatccggactgtgatgaccgtgcgggacttcacccaggtgttcgacagctacgcc
cagttcgaggagagtatgattgcagcgaagatggagaccgcctcagagctggggcgggag
gaggaggacgacgtagacctggagctgcgcctggcccgcttcgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgtgtggccctgcaccagggccgcccccgggagatcattaatacgtacacggag
gctgtgcagacggtggaccccttcaaggccaccggcaagccccacacgctgtgggtcgcg
ttcgccaagttttacgaggacaacgggcagctggacgatgcccgcgtcatcttggagaaa
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgcgagtgtggc
gagctggagctccggcacgagaactacgaccaggccttgcgacttctgcggaaggcgaca
gcattgcctgcccggcgcgctgagtactttgatggctcagagcctgtgcagaaccgtgtg
tacaagtctctgaaggtgtggtccatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaggcagtgtatgaccgaatcctggacctgcgcattgccacgccacagatc
gtcattaactatgccatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tatgagcgcggcatctcgttgttcaagtggcccaacgtgtcggacatctggagtacttac
ctgacgaagttcattgcccgctacgggggccgcaagctggagcgggcacgcgacctcttt
gagcaggcgctggatggctgccctcccaaatacgcaaagacgctgtacctgctctatgca
cagctggaagaagagtggggcctggcgcggcacgccatggcagtgtacgagcgcgccacc
agggccgtggagcccgcgcagcagtatgacatgttcaacatctacatcaagcgggcggcc
gagatctacggggtcacccacacccgcagcatctatcagaaggccattgaggtgctgtct
gatgagcatgcccgggagatgtgcctgcggtttgctgacatggagtgcaagctcggggag
atcgaccgtgcccgggccatatacagcttctgctcgcagatctgcgacccccggacgacc
ggtgccttctggcagacgtggaaggacttcgaggtccggcatggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagtgtgcaggccacatacaatacacaggtcaacttc
atggcctcacagatgctcaaggtgtcgggcagcgccacgggcaccgtgtccgacctggcg
cccgggcagagcggcatggatgacatgaagctgctggagcagcgtgccgagcagctggcg
gcggaggctgagcgggaccagccctccagggcccagagcaaaatcctgttcgtgaggagt
gatgcctctcgggaggagctggctgagctggcgcagcaggccaacccagaggagattgag
ctgggcgaagacgaggatgaggatgagatggacctggagcccaacgaggtgcgcctggag
cagcagagcgtgccagctgctgtgttcgggagcctgaaggaagactga
DBGET
integrated database retrieval system
