KEGG   Odocoileus virginianus (white-tailed deer): 139031270
Entry
139031270         CDS       T10722                                 
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
ovr  Odocoileus virginianus (white-tailed deer)
Pathway
ovr03320  PPAR signaling pathway
ovr04148  Efferocytosis
ovr04151  PI3K-Akt signaling pathway
ovr04659  Th17 cell differentiation
ovr04919  Thyroid hormone signaling pathway
ovr04920  Adipocytokine signaling pathway
ovr04928  Parathyroid hormone synthesis, secretion and action
ovr04932  Non-alcoholic fatty liver disease
ovr04976  Bile secretion
ovr05160  Hepatitis C
ovr05200  Pathways in cancer
ovr05202  Transcriptional misregulation in cancer
ovr05207  Chemical carcinogenesis - receptor activation
ovr05216  Thyroid cancer
ovr05222  Small cell lung cancer
ovr05223  Non-small cell lung cancer
ovr05226  Gastric cancer
ovr05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ovr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    139031270 (RXRA)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    139031270 (RXRA)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    139031270 (RXRA)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    139031270 (RXRA)
   03320 PPAR signaling pathway
    139031270 (RXRA)
   04919 Thyroid hormone signaling pathway
    139031270 (RXRA)
   04928 Parathyroid hormone synthesis, secretion and action
    139031270 (RXRA)
  09154 Digestive system
   04976 Bile secretion
    139031270 (RXRA)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    139031270 (RXRA)
   05202 Transcriptional misregulation in cancer
    139031270 (RXRA)
   05207 Chemical carcinogenesis - receptor activation
    139031270 (RXRA)
  09162 Cancer: specific types
   05226 Gastric cancer
    139031270 (RXRA)
   05216 Thyroid cancer
    139031270 (RXRA)
   05222 Small cell lung cancer
    139031270 (RXRA)
   05223 Non-small cell lung cancer
    139031270 (RXRA)
  09172 Infectious disease: viral
   05160 Hepatitis C
    139031270 (RXRA)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    139031270 (RXRA)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    139031270 (RXRA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ovr03000]
    139031270 (RXRA)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:ovr03310]
    139031270 (RXRA)
Transcription factors [BR:ovr03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    139031270 (RXRA)
Nuclear receptors [BR:ovr03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   139031270 (RXRA)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 139031270
NCBI-ProteinID: XP_070312075
LinkDB
Position
2:100086480..100179653
AA seq 467 aa
MDTKHFLPLDFSTQVSSSSLGSPAARSSMAAPSLHPSLGPSIGPSLGSPGQLHSPISTLS
SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLSSPMNPVSSSEDIKPPLGLNG
VLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRGEGEAEPTSSANEDMPVEKV
LEAELAVEPKTETYVEASVGLSPGSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLD
DQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVS
KMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRF
AKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggacaccaaacatttcctgccgctcgacttctccacgcaggtgagctcctcctccctc
ggctcccccgcggcgcgcagctccatggccgccccctcgctgcacccctccctggggccc
agcatcggcccctcgcttggctccccgggacagctgcactcgcccatcagcaccctcagc
tcgcccatcaacggcatgggcccgcccttctcggtcatcagctcccccatggggccgcac
tccatgtcggtgcccaccacaccgaccctgggctttggcaccggcagcccccagctcagc
tcgcccatgaaccccgtcagcagcagcgaagacatcaagcccccactgggcctcaatggt
gtcctcaaagtgccggcccacccctcagggaacatggcgtccttcaccaagcacatctgt
gccatctgtggggaccgctcctcaggcaagcactacggggtgtatagctgcgagggctgc
aagggcttcttcaagcggacggtgcgcaaggacctgacctacacttgccgcgacaacaag
gactgcctgattgacaagcggcagcggaaccgctgccagtactgccgctaccagaagtgc
ctggccatgggcatgaagcgcgaagccgtgcaggaggagaggcagcgcggcaaggaccgg
ggcgagggcgaggcggagccgaccagcagcgccaacgaggacatgcccgtggagaaggtc
ctggaggccgagctggccgtcgagcccaagaccgagacctacgtggaggccagcgtgggg
ctgagccccggctcgcccaacgaccctgtcaccaacatctgccaagcggctgacaagcag
ctcttcacgctggtggagtgggccaagcggatcccgcacttttccgagctgcccctggac
gaccaggtcatcctgctgcgggcaggctggaacgagctgctcatcgcctccttctcgcac
cgctccatcgccgtgaaggacggcatcctcctggccaccgggctgcacgtgcaccgcaac
agcgcccacagcgcgggcgtgggcgccatcttcgacagggtgctgacggagctggtgtcc
aagatgcgggacatgcagatggacaagacggagctgggctgcctgcgcgccatcgtcctc
ttcaaccccgactccaaggggctctcaaacccagccgaggtggaggcgcttcgcgagaaa
gtctacgcatccctggaggcgtactgcaaacacaagtaccccgagcagccaggaaggttc
gccaagctgctgctgcgcctgcccgcccttcgctccatcggcctcaagtgcctggagcac
ctcttcttcttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgctg
gaggccccgcaccagatgacttag

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