Odocoileus virginianus (white-tailed deer): 139033900
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Entry
139033900 CDS
T10722
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr04512
ECM-receptor interaction
ovr04514
Cell adhesion molecule (CAM) interaction
ovr04820
Cytoskeleton in muscle cells
ovr05144
Malaria
ovr05205
Proteoglycans in cancer
ovr05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139033900
04514 Cell adhesion molecule (CAM) interaction
139033900
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139033900
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
139033900
09174 Infectious disease: parasitic
05144 Malaria
139033900
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
139033900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ovr04131
]
139033900
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ovr04090
]
139033900
00535 Proteoglycans [BR:
ovr00535
]
139033900
Membrane trafficking [BR:
ovr04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
139033900
CD molecules [BR:
ovr04090
]
Proteins
139033900
Proteoglycans [BR:
ovr00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
139033900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Motif
Other DBs
NCBI-GeneID:
139033900
NCBI-ProteinID:
XP_070319970
UniProt:
A0ABM4HWM3
LinkDB
All DBs
Position
Unknown
AA seq
312 aa
AA seq
DB search
MRRAALWLWLCALALRLQPALPHSVAINMPPEDQDGSGDDNDNFSGSGAGALPDITSSQT
PSTWKDLGPVTTTATAPEPTSPDAIAASTTVLPTREQPEGGGPVLLAEAGPGLTTQEKEA
THPPSKTTLHPTTHGVSTARATTVPGPATSHPHRDVQPEHHETSAPTGRGHLEPHTPHVG
DGGPSATEKAAEGDPSTQVPVVEGSGEQDFTFDVSGENAAGAAVEPGSRNGPPGDPEATG
ATGASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGA
YQKPTKQEEFYA
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcgcggcgctctggctgtggctctgcgcgctggcgctgcgcctacagccggcc
ctcccgcacagtgtggccataaacatgccccccgaagatcaggatggctctggggatgac
aatgacaacttctctggctcgggcgcaggtgctctgccagatatcacctcgtcacagaca
ccctccacctggaaggacctggggcccgtgacgaccacagccacggctccagagcccacc
agcccagacgccatcgctgcctccaccaccgtcctgccaaccagagagcagcctgagggg
ggtgggccggtgctcctggcagaggcggggcctggcctcaccacccaggagaaggaggcc
acccacccacccagcaagaccacgctgcacccgaccactcacggggtgtccacagccaga
gccaccacagtcccaggacctgccacctcccatccccacagggacgtgcagcccgagcac
catgagacctcagctcccacaggccggggccatctggagccgcacacgccccacgtgggg
gatggaggaccttctgccactgagaaggcggccgagggggacccctccacccaggtccca
gtggtagagggctctggggagcaggacttcacctttgacgtgtccggggagaacgcagct
ggggccgcggtggaacctggctcacggaacgggcccccgggggatcctgaggccacgggg
gctacgggggcctcgcagggcctcctggaccggaaggaagtgctgggaggggtcattgct
ggaggcctcgtggggctcatctttgccgtgtgcttggtgggtttcatgctgtaccggatg
aagaagaaggacgagggcagctactccttggaggagccaaaacaagccaacggcggggcc
taccagaagcccactaagcaggaggagttctacgcctga
DBGET
integrated database retrieval system
