Orbus wheelerorum: RHO14_12235
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Entry
RHO14_12235 CDS
T10511
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
owh Orbus wheelerorum
Pathway
owh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
owh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHO14_12235 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
owh03019
]
RHO14_12235 (rne)
03009 Ribosome biogenesis [BR:
owh03009
]
RHO14_12235 (rne)
Enzymes [BR:
owh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RHO14_12235 (rne)
Messenger RNA biogenesis [BR:
owh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHO14_12235 (rne)
Ribosome biogenesis [BR:
owh03009
]
Prokaryotic type
rRNA processing factors
RHO14_12235 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
CHP02642
Motif
Other DBs
NCBI-ProteinID:
WVD71099
LinkDB
All DBs
Position
2775404..2778181
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AA seq
925 aa
AA seq
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MKRMLINATQQEELRIALVDGQRLYDLDIESLGHEQKKANIYKGTITKINPSLEAAFVSY
GGERDGFLPLKEIADSYFPNDVSGRRSIKNLQEGQEVLIQIEKEIRGKKGAALTTYISLA
GSYLVLMPNDPRAGGVSRRIEGEERADLKRNIDALEKPKGMGVIARTAGVGKNQEELQQD
LDALVTYWKAIQIEAKNHPAPSLIHKESDVITRAFRDYLREDVGEIWIDNRKILEIAKKR
LEDLGRVEYQDRLKPYDGEISLFSHYQIEGQIESAFQREVRLPSGGSIVIDATEALTAID
INSAKSIKGSDIEETAFNTNLEAAEEIARQLRLRDLGGLIVIDFIDMTPIRNQREVENRL
KEAMKSDRARIQTARISRFGLLEMSRQRLSSSLREATHHICPRCQGTGTVRDNNSLSLSI
LRLIQEEAMKDNTAQIDVIVPVPIASYLLNEKRRAITNIESSYPDIKIVIAADSEMETPL
YKVIRKRNGEETDVLSYNLPKLIRELEEEEEGQITEYAAEEAILSGVKVELNTSQVKTKT
VEQAQPTVGIFSAFAKKLRGFFAPSEKAIPAIDEKNQVKPVENSNKDVREKSNRRPGTNR
RDKFTNRNQQVANNEVKEKELTNKNSRRNNRPNKSEEAIVPVVSETIESSPQQTKAPVKP
RRAQRNLDKKVRVANGNAAQQVPSTTATVAKPIAKEAKNDVKSIIIPSVLSAVVLKNEHD
TAGNDNQSNRRPRRTSRHLRLNNQRRKKAKNVAQSVSPVPLTLAVYSTELALGRVSIDYN
LVNEALVTKTEQRNYTQQVTENKVDVVKFTTIPSLLSPVIIVTTTKVETKAEPVKPHKAK
TKPVVQDIANDKVVAVSNFTGSSSSTMMKAPAPNSDSNVSTTIVSRDESTYQYAGKGNAG
ALSADNHAYSGASKPVLSGTDSSDN
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgctacgcaacaagaagagttgcgtattgcgcttgttgat
gggcaacgcttatatgatctcgatattgaaagccttggtcatgagcagaaaaaagcgaat
atttataaaggtactattaccaaaattaatcctagcttagaagccgcctttgtttcatac
ggtggtgaacgtgacggattcctaccattaaaagaaatcgccgatagttatttccctaat
gatgtttctggtcgccgtagcattaaaaacctacaagaaggccaagaagtcttaatccaa
attgagaaagagattcgtggaaaaaaaggtgcagcgcttactacctatatcagtttagct
ggtagctatttagtattaatgccaaatgatcctcgagctggcggtgtatcaagacgcatt
gaaggcgaagaacgtgctgacttaaaacgaaatatcgatgcattagaaaaacctaaagga
atgggcgttattgctcgaacagctggtgtcggtaaaaatcaagaagagttacagcaagat
cttgatgcgcttgttacctattggaaggcaattcaaattgaagctaagaatcatccagca
ccaagcttaatccataaagaaagcgatgtaattacccgtgcttttcgtgattacctgcgc
gaagatgtaggtgaaatttggattgataatcgaaaaatattagagattgctaaaaaacgg
ttagaagatcttggccgcgttgaatatcaagatcgattaaaaccttacgatggtgaaatt
tcgctatttagtcattatcaaattgaagggcaaatcgaatcagcgtttcaacgagaagtg
agattaccatctggtggctcaattgtcattgatgcgactgaagcacttactgctattgat
attaactccgccaaatcgattaaaggaagtgacattgaagagacggcatttaataccaat
cttgaagctgcagaagaaatagcaagacaacttcgtttacgcgatcttggtggtttaatt
gttatcgattttattgatatgacgccaattcgtaatcagcgtgaagttgaaaaccgccta
aaagaagcaatgaaaagtgatcgcgctaggatccaaaccgcaaggatatcgcgttttggt
ttattagaaatgtcgcgtcaaagattaagttcatcgctacgcgaggcaacacatcatatt
tgccctcgctgtcaaggaacaggaactgttcgtgataataactcgttatcattgtcaatt
ttacgattgattcaagaagaggcaatgaaggataatacagcgcaaattgatgtaattgtc
ccggttccaattgcgagctatttactcaatgaaaaacgtcgagcaattactaacattgaa
agtagctatcctgatattaaaatcgtcattgcagctgatagtgaaatggaaacgcctctt
tataaagttatccgtaaacgcaatggtgaggaaactgatgtactaagttataatttgcct
aagctaattcgagaattagaagaagaggaagaaggccaaattactgaatacgcggcagaa
gaagcaattttatccggcgttaaagttgagctaaatacttcacaagttaaaactaaaaca
gtcgaacaagcgcaaccaactgtaggtatttttagtgcatttgcgaaaaaactacgcgga
ttctttgctccttcagaaaaagcaattccggctattgatgaaaaaaatcaggttaagccg
gtagaaaatagtaataaagatgtaagagaaaagagtaatagacgccctggaactaatcgt
cgcgataaatttacaaatcgtaatcaacaagtagcgaataatgaagtaaaagagaaagag
ctaacaaataaaaatagtcgtcgaaataatagaccaaataaaagtgaagaggcaattgtt
ccagttgttagtgaaaccattgaatcatcgccacaacagactaaagcgccagtaaaacca
agacgagctcaacgaaatttagataagaaagttagagtagcaaatggtaacgctgctcag
caagtaccttcaacgaccgcgactgtcgctaaaccaattgcgaaagaagctaagaacgac
gttaaaagtatcattattccatctgttttatctgccgtagtattaaaaaatgagcatgat
accgcaggtaatgataatcaatctaatcgtaggccaagaagaacgtctcgccatttacgt
ttaaataaccaacgtagaaaaaaagcaaaaaatgtcgcgcaaagtgtatcaccagtgcca
ttaacgctagccgtttattctacggaactggctttaggtagagtttcgatcgattataat
ctagtgaacgaagcactagttacaaaaactgagcagcgtaattatacgcagcaagtaaca
gaaaataaggttgatgtagtaaaatttactactattccgtcattactttcgccagttatt
attgttacaacgacaaaagtagagacaaaagctgagccagttaagccacataaagcgaaa
actaagcctgtggtgcaagatatcgctaatgataaagttgtcgcggtatctaattttaca
ggttcttcatcatcaacaatgatgaaagcacctgcaccaaattcagattctaacgtttca
actacgattgtttctcgtgatgaatcaacttatcagtacgcaggtaaaggtaatgctggt
gcactaagtgcagataaccatgcttattctggtgcaagtaaaccagttttatcaggtact
gactcatcagataattga
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