Oxynema aestuarii: HCG48_04880
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Entry
HCG48_04880 CDS
T06528
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
oxy
Oxynema aestuarii
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oxy03016
]
HCG48_04880
Enzymes [BR:
oxy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HCG48_04880
Transfer RNA biogenesis [BR:
oxy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HCG48_04880
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QIZ69993
UniProt:
A0A6H1TW57
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All DBs
Position
1236021..1238042
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AA seq
673 aa
AA seq
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MEKGTLLEYRLQGERRLAVADRPDGKKNWIVIDEFGQSQSLPPRQISYEVTGEQYKPTDI
PRFRQDAEPYIDPSSLEVAWEILVEEGQGVNPPELAQFLFSEQTPVACYAAYLLLSEDKL
YFKQKGDRYEPRPVSQVNDLKHQQEVERQKQQEWEEFVARVERSLAGEQAEWSNSDRIRI
EALERYAAQGEDAKDRATAKETLSALERPDSSQGAFDLLVDLGLWSEHENLFVRRTQLPT
YFSTKVLEVAHRCLTSPPPDPDADNRLDLTHLKVYTIDDESTEEIDDGLSVESLEDGRRR
LWVHIADPTRWLTPGDELDLEARRRCTTVYLPTGMVPMFPPELATGPMSLVQGEICPALS
FGIVLDDNGAVEDYTIHPSIIKPTYRLTYHDVDEMLQLGIQAEPEIAQIAESAKKRQQWR
DSQGAIAISMPESTIKVCGDEIFVEVLDDSPARQLVAEMMILTGEVAGHFGQRENIPLPF
RSQPTPELPPPEELQLLPPGPVRACAIRRCMPRSEMSTKPGRHASLALDNYTQVTSPIRR
YSDLLAHFQIKAYLRGDEVPFSSQDLQDVMLSISSSIKEASVVERQTNRYWALEYLRRHP
NQVWQVLVLRWLREEENLGLILLEELGMELPWRFPRAVSLGERLEVQVTHSDPREDQINF
QEMLYQTAQTSIN
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
gtggagaagggaacgctgctcgaataccgactgcaaggagaacgccgtctcgccgtggcg
gatcgtccggatgggaaaaaaaactggatcgtcatcgacgaattcggtcagtcccaaagc
ctacctcctcgccaaatcagttacgaagtgacgggagaacagtacaaacccacggatatc
ccccgttttcggcaagacgccgagccgtatatcgacccgtcgagtttggaagtcgcctgg
gaaattctcgtcgaagaaggacagggagtgaacccgccggaactggcgcaatttctcttt
tccgaacaaaccccggtggcgtgttacgccgcttatttactgctgtccgaagataaactt
tacttcaaacagaagggcgatcgctacgaacctcgcccggtctctcaagtcaacgacctc
aaacatcaacaagaagtcgaacggcaaaaacaacaagaatgggaagaattcgtcgctcgg
gtcgagcgcagtttggctggggaacaagccgaatggtcgaatagcgatcgcatccgcatc
gaagccctagaacgctacgcagctcagggagaagacgccaaagatcgagcgaccgctaaa
gaaaccctcagcgccttagaacgtcccgacagttctcaaggtgcttttgatttattggtc
gatttgggcctgtggagcgaacacgaaaatctattcgtgcggcgcactcagcttcccacg
tatttctctactaaggtactcgaagtggctcaccgttgtctgacctcccctccaccggat
cccgacgccgacaaccgcctcgacttgacccacttaaaggtgtacaccatcgacgacgaa
agcaccgaagagatcgacgacggcttgagcgtggagtccctcgaagacgggcgccgacga
ctttgggtacacattgccgaccccacacgctggctgacccccggcgacgaactcgattta
gaagcgcgccgacgctgcaccacagtttacctccccacgggcatggttcccatgtttccg
ccggaactcgccaccggaccgatgagtttggtgcaaggggagatttgtccggcgctcagt
ttcggcattgtcttggacgacaacggcgccgttgaagactacacgattcacccgagcatt
atcaaaccgacctatcgcctcacctaccacgatgtcgatgaaatgctccaactcggcatt
caagcggagccggaaattgcccaaattgccgaatcggctaaaaaacggcagcaatggcgc
gactcccaaggggcgatcgccatttccatgcccgaatcgacgattaaagtctgcggcgac
gaaatcttcgtcgaagtcctcgacgattcccccgcccgccaactggtcgccgaaatgatg
atcctcaccggggaagtcgccggacatttcggtcaacgggaaaacattcccctgccgttt
cgttcccaaccgaccccggaactgccgcccccagaagaattgcaactgttgccccccggt
ccagtgcgcgcctgcgcgatccggcgttgtatgccccgcagcgaaatgagtacgaagccc
ggacgccatgcgagtttagctttggataactacactcaagtcacctcgccgattcgccgc
tacagcgatttactggctcattttcaaattaaggcgtacttgcgcggggacgaggtgccg
ttttcttcgcaagacctgcaagacgtgatgctgtcgatctccagttcgatcaaagaagcc
tctgtcgtcgaacgccaaaccaatcggtattgggccttggaatatctgcgccgtcatccg
aaccaagtctggcaagtactggtcttgcgctggctgcgcgaagaagaaaacttagggctg
atcttgttagaagagttgggaatggaactgccctggcgcttcccgcgtgcggtctcgtta
ggggaacggctggaagtgcaggtcacgcactccgacccgcgcgaagatcaaattaatttc
caagaaatgctctatcaaaccgctcaaacttcgattaactga
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