Oxynema aestuarii: HCG48_07975
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Entry
HCG48_07975 CDS
T06528
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oxy
Oxynema aestuarii
Pathway
oxy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCG48_07975 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oxy03400
]
HCG48_07975 (mfd)
Enzymes [BR:
oxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCG48_07975 (mfd)
DNA repair and recombination proteins [BR:
oxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HCG48_07975 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QIZ70525
UniProt:
A0A6H1TVP7
LinkDB
All DBs
Position
complement(1982041..1985547)
Genome browser
AA seq
1168 aa
AA seq
DB search
MAFSSILRTLGRSPLATELLAKLEQQRCIQLDGIGRLPKGLIASTLAQEGGRPLVVVTAT
LEEASRWAAQLEAMGWQTVHFYPTSEASPYEPFDPESETIWGQLQVLADLLALGDLDGGD
RPSMAIVVTQRALQPHLPPVDRFAPYCWTLTPGTTCEGKAIDEKLARLGYDRVPLVEMEG
QWSRRGDIVDIFPVSAELPVRLDWFGDDLEQMREFDPSTQRSLDKIDRLVLTPTSFRPAI
EEGLTDAGLAPIAPVEVADENRFGEGARGIGRLLGLAFDRPASILDYLAPDTLVAIDEPQ
QCQAHGDRWFQIVEDHYQIAQNHDIPGYPPLARFHEAIADTFEQTEGFDRLYLSELAESR
PAHPDVQKPYNLDSHPVPVMPHQFGKMAAAIREQRDRRFGIFIVSAQPSRSVSLLQEHDC
PAQFVANPRDYRTIDRLQIEHTPIAVRYKGLAEIEGFVLDAFRIALFGDREFYGQHLLAT
PSYIRKRRRAKSTQVDPNKLRPGDYVVHRHHGIGRFIKLEKLENREYLAVKYADGLLKVR
VDQLDSLSRFRQTGRGRPQLNKLQNNKAWEKTKNKVRKAIKKLAVDLLDLYAKRSKQQGF
LYPPDMPWQQELEDSFPYQPTPDQLKATQDVKRDMEGDRPMDRLVCGDVGFGKTEVAIRA
IFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPIQVALLNRFRTAQERRDIQQRLAT
GELDVVVGTHSILGKTVKFRDLGLLVVDEEQRFGVNQKEKIKSYKTQVDVLTLSATPIPR
TLYMAMSGIREMSLITTPPPSRRPIQTHLAPYDEETVRTAIRQELDRGGQVFYVVPRIEG
IDELAASLQQTIPSARIAIAHGQMAASELESIVLGFSSGEADILVCTTIIESGLDIPRVN
TILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWMFYPKDKVLSDDARKRLRAIQEFSQLGS
GYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLQEAIREIRGQEIPQVEETQVDL
PMTAFIPTDYITDLDQKMVAYRQIASASSRKELTQIAADWSDRYGPLPNPVKQLMQIVEL
KQIAKPLGFSRIKPEGQNIILETPMEEPAWNVLKANLSPSVQEKFVYSKGRVSARGLSFM
RREQQLEYLIDILSKMQGALPETAIAAS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttcttcaattctccgcactctcggacgatcgcccctggcgacggaactgctc
gcaaaattggagcaacaacgctgcatccagctcgacgggatcggacgtttaccgaaaggg
ttgattgcatcgaccctggcgcaagaggggggtagacccctggtggtggtgacggcgact
ttagaagaagccagtcgctgggccgcccagttggaggcgatggggtggcaaacggtgcat
ttttacccgacttccgaggcgtcgccttacgaacctttcgacccggaatcggagacgatc
tggggacagttgcaagtgttggcggatttgctggcgctgggggatctcgacgggggcgat
cgcccgtcgatggcgatcgtggtgacccagagggcgctacaaccgcatttaccgcccgtg
gatcggttcgcgccgtactgctggacgctgacgccgggaacgacgtgcgagggaaaggcg
atcgacgaaaaactggcgcgtttgggttacgatcgcgtccccttggtcgaaatggagggt
cagtggagtcggcgcggcgatattgtcgatattttcccggtgtcggcggaattacccgtg
cgcctggactggttcggcgacgacctcgaacagatgcgcgaattcgacccgtccacccaa
cgatcgctcgacaagatcgatcgcctcgtccttacccccacgagctttcgtccggcgatc
gaggagggactgaccgacgccggactcgcgccgatcgcccctgtagaagttgccgacgag
aatcgctttggggagggcgcgcgcgggatcgggcggttgctggggttggcgttcgatcgc
cccgcctcgatcctcgactacctggcgccggataccctagtggcgatcgacgaaccgcaa
caatgccaggcccacggcgatcgctggttccaaatcgtcgaagatcactatcaaatcgcc
caaaatcacgacattcccggctatccgcccttggcgcgcttccacgaggcgatcgccgac
actttcgagcagaccgaagggttcgatcgcctctacctgagcgaactcgccgagtcccga
cccgcccatccggacgtccaaaaaccctacaatctcgacagccacccggttccggtgatg
ccgcaccaattcgggaaaatggccgcagcgatccgcgaacaacgcgatcgccgcttcggc
atctttatcgtatccgcccagccgtcgcgatcggtttccctgctgcaagaacacgactgt
cccgcccaattcgtcgccaacccgcgcgattaccgcacgatcgatcgcctgcaaatcgag
catactccgatcgccgtgcgttacaaaggactcgccgaaatcgaaggattcgtcctcgac
gcctttcggattgccctgttcggcgatcgtgaattctacggtcaacacctgctcgccacc
cccagctacatccgcaaacgccgacgcgccaaatctacccaagtcgatcccaacaaactc
cgtcccggcgattacgtcgtccaccgccaccacggaatcggcagatttatcaaactcgaa
aaactcgaaaatcgagaatatctcgccgtcaaatatgccgacggcttactcaaagtccgc
gtcgatcaactcgattccttgagccgttttcgtcaaaccggacggggtagaccccaactc
aacaaactccaaaataataaagcctgggagaaaacgaaaaataaagtccgcaaagccatt
aaaaaattggccgtggacctgctcgacctctacgccaaacgctccaaacagcaaggcttt
ctctacccgcccgatatgccttggcaacaagaattagaggactctttcccctaccaaccg
actcccgaccagctcaaagccacccaagatgtcaaacgggacatggaaggcgatcgcccc
atggaccgcctcgtctgcggcgacgtcggctttggcaaaaccgaagtcgccatccgcgcc
atctttaaagcggtcaccgccggaaaacaagtggccctgctcgcccccaccactattctc
actcaacagcactatcacacgctcaaagagcgattcgctccctacccgatccaagtcgct
ctgctcaaccgcttccggactgctcaagaacggcgcgacatccaacagcgcctcgcgact
ggggaactcgatgtcgtcgtcggaactcactcgatcttgggcaaaacggtcaaatttcga
gacttgggactgctggtggtagacgaagaacagcgtttcggggtcaaccagaaggaaaaa
attaagagttataaaactcaggtagacgtgctgaccttgagcgccaccccgattccgagg
acgttatacatggcgatgtccggcattcgcgaaatgagtttgattacgaccccgccgccg
tctcgccgcccgattcaaacccatttagccccttacgacgaggaaaccgtgcggacggcg
atccgccaagaactcgatcgcggcggacaggtgttttacgtggtgccgcgcattgaaggg
atcgacgagttggcggcgtctttacagcaaacgatccccagcgcccggatcgcgatcgcc
cacggtcagatggcggcgtcggaactcgaatcgatcgtgctcgggtttagttccggcgag
gcggatatcttggtctgtaccacgattatcgagtccggtttggatattcctcgggtgaat
acgattttgatcgaggacgcccatcgtttcggcttgtcgcaattgtatcaactgcgcggt
cgcgtcggtcgcgccggaattcaagcccacgcctggatgttttatcccaaagataaagtg
ttgagtgacgacgcgcgcaagcgactgcgggcgattcaggagttcagccaattgggttcg
ggctatcaattggcgatgcgggatatggaaatacgcggcgtcggtaatttgttgggggcg
gaacagtccggtcaaatggacgcgatcggattcgatttgtatatggaaatgctgcaagaa
gcgatccgagaaattcgcggtcaagaaattccccaagtggaagaaacccaggtcgattta
ccgatgacggcgtttattcccaccgattacattaccgatttagatcaaaagatggtcgct
tatcgtcaaattgcctcggcaagttcgcgcaaggagttaactcaaattgcggcggattgg
agcgatcgctacggcccgcttcccaatccggtcaaacagttaatgcaaattgtcgaactc
aagcaaattgctaaaccgttgggcttctctcgcattaaaccggaaggtcaaaatattatt
ttggaaacgccgatggaggagcccgcctggaatgtactcaaagcaaatttaagccccagc
gttcaagaaaagtttgtttacagtaaagggagagtcagcgcccggggtctgtcgttcatg
cgccgcgaacaacaattggagtatctgatcgatattttgagcaaaatgcaaggggcttta
ccggaaacggcgatcgccgccagttaa
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