Oxynema aestuarii: HCG48_08195
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Entry
HCG48_08195 CDS
T06528
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
oxy
Oxynema aestuarii
Pathway
oxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCG48_08195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oxy03019
]
HCG48_08195
03009 Ribosome biogenesis [BR:
oxy03009
]
HCG48_08195
Enzymes [BR:
oxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HCG48_08195
Messenger RNA biogenesis [BR:
oxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCG48_08195
Ribosome biogenesis [BR:
oxy03009
]
Prokaryotic type
rRNA helicases
HCG48_08195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
AAA_30
Cas3-like_C_2
HEM4
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QIZ70561
UniProt:
A0A6H1TVH9
LinkDB
All DBs
Position
complement(2036890..2038335)
Genome browser
AA seq
481 aa
AA seq
DB search
MTLSFQSLGLSDARVEHLAKNGFTEPTAIQEQAIPHLLSGQDVVGQAQTGTGKTAAFSLP
ILEQLDPSDKTVQALVLTPTRELAIQVSNAISELNDDRRVRILSVYGGASIERQIQRLDR
GVQIVVGTPGRVLDLLGRNSLKLDTLKWMVLDEADEMLSMGFIQDVEKILKAAPQEHQTA
FFSATMDASIKALIRKFMNDPITVAIEMKTTPKRIEQAVYMVPRGWSKSRALQPILELED
PESAIVFVRTRRAAAELTSQLQAAGHSADEYHGDLNQSQRERLLHRFRQQQVRWIVATDI
AARGLDVDHLTHVINYDLPDSVESYVHRIGRTGRAGREGTAISLILPYDRRKLRQIEDRV
GQRFDIRSIPTRSQIEARHLEKLQTQVHEVLAGERLASFLPIVAQLSEEYDPHAIAAAAL
QLAYDRIRPNWAESEAPEEPIPVYSSKPRRNGDRRTPRPRKSFEPPKKKRSSRREPIGDR
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgactctttcgtttcaaagtcttggtctttccgatgcccgtgtagagcatctagcaaaa
aacggcttcaccgagccgacggctattcaagagcaagcaatccctcacctactatccggt
caggatgtggtgggacaagcccaaacggggacgggtaaaaccgccgccttttcgctgcca
attttagagcagctcgatccgagcgataaaaccgtgcaggccctggtgttgacgccgacg
cgcgagttggcgattcaggtctccaacgcgatttccgagttgaacgacgatcgccgcgtg
cggattctctcggtttacggcggcgcctcgatcgaacgccaaatccaacggttagaccgt
ggcgtgcagatcgtggtgggaacccccggacgagtgttggatttactcggacgcaacagc
ctcaaactcgacaccctcaaatggatggttctcgacgaagccgacgagatgttgagtatg
ggcttcatccaagatgtcgaaaaaatcctcaaagccgcaccgcaagagcatcagacggca
tttttctcggcgacgatggacgcctcgatcaaagcgctgatccgcaaattcatgaacgat
ccgatcaccgtggcgatcgaaatgaaaaccacgccgaagcggatcgaacaggcggtttac
atggtgccgcgcggctggtcgaaatcgcgcgccttgcagccaattttagagttggaagat
ccggaatcggcgatcgtcttcgtgcgtacccgccgggccgccgccgaactgaccagccaa
ctgcaagcggcgggtcacagtgccgacgaatatcacggcgatttgaaccagtcccaacgg
gagcgcctgttacatcggttccgccaacaacaggtgcgttggatcgtggcgacggacatc
gccgcacggggtctcgacgtggatcatttgactcacgtgattaactacgatttgcccgat
agtgtcgaaagttacgtccaccgcatcggtcgcacgggccgggccggacgggaaggaacg
gcgatttcgctgattcttccttacgatcgccgcaaactgcgtcagattgaggatcgggtg
ggccaacggttcgatattcgttcgattccgacgcgatcgcaaattgaggcgcgccatctg
gaaaaactgcaaacccaggtgcatgaggttctcgccggagaacgcttggcgtccttcttg
ccgattgtcgcccaattgagcgaagagtacgatccccacgcgatcgccgccgccgccttg
caactggcttacgaccgcatccgtccgaactgggccgaaagcgaagcgccagaagaaccg
attccggtgtacagcagtaagccccggcgcaatggcgatcgccgcactccccgtcctcgt
aaatcgttcgagcctcccaagaaaaaacgctcctcgcgtcgcgaaccgatcggcgatcgc
aagtag
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