Oxynema aestuarii: HCG48_08540
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Entry
HCG48_08540 CDS
T06528
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
oxy
Oxynema aestuarii
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oxy03021
]
HCG48_08540
Transcription machinery [BR:
oxy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HCG48_08540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_r3
HTH_24
HTH_23
HTH_AsnC-type
HTH_Tnp_ISL3
LacI
Sigma70_ECF
KORA
HTH_8
HTH_10
CC_BshC
HTH_38
ApoC-I
KfrA_N
YPEB_N
PigL_N
DUF3972
Motif
Other DBs
NCBI-ProteinID:
QIZ70621
UniProt:
A0A6H1TVN2
LinkDB
All DBs
Position
complement(2118836..2119618)
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AA seq
260 aa
AA seq
DB search
MADQSSVRSRGMELLIAYHHNPSIQIRNQIVRLNVGLVRKIAHRVSHQCAEPYEDLEQIG
YLGLIRAIERFDPTQGCAFSSFAVPYIRGEMLHFLRDKASTVRIPRRWRELQAQGQKVRE
SLTVSLGRPPKDLEIAQALDVSLSEWRESKLAHQNRTPLSLDATVAHQVDSTVTLGDTLL
DTHYQTLQSLEEERQQLQGALNNLEEKTRWAIESVFFQEIPRKEVAQQIGVSPMTVTRRI
KRGLGELMTLLKPSLAQVES
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcaatcctctgtacgctctagagggatggaacttttaatcgcttaccatcac
aatccctccattcaaattcgcaatcaaatcgtgcggttgaatgtcggtttggttagaaaa
attgctcaccgcgtcagtcatcaatgcgcggaaccttacgaggatctcgaacaaatcggc
tatttgggcttgattcgggcgatcgaacgcttcgaccccacccaaggatgtgcctttagt
tcgtttgccgttccttacattcgcggcgaaatgctgcattttctacgcgataaagcctct
acggttagaattccccgtcgctggcgcgaattgcaagcgcaaggtcaaaaagttcgcgaa
agtctgaccgttagcctcggtcgtccgcccaaagacctcgaaatcgctcaagccctcgac
gtttccttatccgagtggcgcgaaagtaaattagcccatcaaaaccgcactccgttgagt
ttggatgcgacggtcgcccatcaagtcgatagtacggtgaccctgggcgatacgttactc
gatacccattaccaaactctgcaaagtctggaagaagaacgccagcagttgcaaggggct
ttaaacaatttagaagaaaaaacgcgctgggcgatcgaatcggtgtttttccaagaaatc
ccgcgcaaggaagtcgcccaacaaatcggcgtcagtccgatgacggtgacccgtcgcatc
aaacggggattgggcgagttgatgacgttattaaaaccgtcgttggcgcaggtcgaatct
tag
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