Oxynema aestuarii: HCG48_08905
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Entry
HCG48_08905 CDS
T06528
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
oxy
Oxynema aestuarii
Pathway
oxy03420
Nucleotide excision repair
oxy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCG48_08905 (pcrA)
03430 Mismatch repair
HCG48_08905 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oxy03400
]
HCG48_08905 (pcrA)
Enzymes [BR:
oxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCG48_08905 (pcrA)
DNA repair and recombination proteins [BR:
oxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCG48_08905 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
HCG48_08905 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
Viral_helicase1
DEAD
ResIII
AAA
Peptidase_C65
CarD_TRCF_RID
DUF2383
Motif
Other DBs
NCBI-ProteinID:
QIZ70684
UniProt:
A0A6H1TVQ1
LinkDB
All DBs
Position
complement(2191319..2193649)
Genome browser
AA seq
776 aa
AA seq
DB search
MTTTTTDFLSQLNPSQRQAAEHFSGPLLVVAGAGSGKTRALTYRIANLIRTHRIDPENIL
AVTFTNKAAREMKERIEVLFAESYALAQYGKPLGGLEPVQQTQVRSRVWKTYIKPLWIGT
FHSLCARILRFDIDKYQDESGRQWNRNFSIVDESEAQDLFKEIVRNQLNLDDKKFDPRKM
RYQISGAKNRGWTPKDLEQNEPNFRGRVMADIYRNYQDLLAKNNALDFDDLIRIPVELFR
QNEQILDYWHRKFNHILVDEYQDTNRTQYDLIRLLSTNGSHPKSFENWEKRSVFVVGDVD
QSIYSFRMADFTILLEFQEDFGDGLADEDTRTLVKLEENYRSRENILELANKLIEKNTER
IEKVLRPTRGEGEQIICHQAFNEVEEADFVVSQIRMLESQHPELNFGAFAILYRTNAQSR
PFEEVLVKSQIPYKIVGGLRFYDRKEIKDVLAYLRAIANPADSISLQRIINTPRRGIGKT
TLQRLTDAASQLNVPLWEILNDETSVNTLAGRSAKAVNAFAKTIAKWQEKIEDCTAAEIY
QGIVEESGYIDELNQQGTDEAENRRQNVEELYNAILQFGEDEEDSSLAGFLASASLASDL
DNLDEGEAAVSLMTLHSSKGLEFPVVFLVGMEDGLFPNFRSLNDPKAIEEERRLCYVGIT
RAQERLFLTMASERRLWGSYERSRPSRFLAELPRELLMGNAVAKQRRSRATAKKIAKGSA
AGVANWNVGDRVVHETFGPGQISHVFGTGEKLALAIKFPRLGQKIIDPKNAPLQKL
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacgaccaccgactttctcagccaactcaaccccagtcaacgccaagccgcc
gaacatttttccggaccgttgctggtcgtggcgggggcgggttcgggcaaaacgcgcgcc
ctgacctaccgcatagccaatttaattcgtacccatcgcatcgatcccgaaaatatcctc
gccgttaccttcaccaacaaggcggcgcgggaaatgaaagaacggattgaagtgctgttt
gccgaatcttatgccttggcgcaatatggcaaacccttgggaggactcgaacccgtccaa
caaactcaagttcgatcgcgggtctggaaaacctacatcaaacccctttggatcggtact
tttcactccttgtgcgcgcggattttgcgcttcgatatcgacaaatatcaagatgaaagt
gggcgtcagtggaaccgcaatttttcgattgtagacgaatcggaagcccaagatttattt
aaagaaattgtccgcaatcaactcaatttagacgataaaaagttcgacccgcgcaaaatg
cgctaccaaattagcggggcgaaaaatcgcggttggacgccgaaagatctcgaacaaaac
gagccgaattttcgcgggcgggtgatggcggatatctatcgcaactatcaagacctgctc
gcaaaaaataatgctctcgatttcgacgatctaattcggattcccgtggaattatttcgg
caaaacgagcaaattctcgactactggcatcgcaagttcaatcatattctcgtcgatgaa
tatcaggataccaaccggacgcaatacgatctaattcgcttgctttccaccaatggcagc
catcccaaatccttcgagaattgggaaaagcgatcggtgtttgtggtcggcgacgtggat
cagtcgatctacagcttccggatggccgattttacgattttgctggagtttcaagaagat
ttcggcgacggcttggcggatgaagacactcgaactttagtgaagttagaggagaactac
cgatcgcgcgaaaatattctcgaattggcgaataaattaatcgagaaaaatacggaacgc
atcgaaaaagtcttgcgaccgacgcgcggcgaaggcgaacaaattatctgccatcaagcg
tttaatgaggtcgaagaggcggattttgtggtcagccaaattcggatgctggaatcccaa
catccggagttgaatttcggcgcatttgcaattttatatcgcacgaatgctcaatcgcga
ccgtttgaggaagtcttggtcaagtcgcagattccttataaaattgtcggcggtttacgc
ttttacgatcgcaaggaaattaaagatgttttggcctatttacgggcgatcgccaatccg
gcggatagcatcagtttgcagcgtattattaacactccccgtcggggaattgggaagacg
actttacaacggttgaccgatgcggcgagtcaattaaatgtgccgttgtgggaaattctc
aacgacgaaacctcggtgaataccttggcggggcgatcggcaaaagcggtcaatgcgttt
gcaaaaacgatcgccaaatggcaagaaaaaatagaggactgtacggcggcggaaatctat
caagggattgtcgaagaatccggttacatcgacgaactcaatcagcaaggaacggacgaa
gcggaaaaccgccgtcaaaatgtagaagaactctacaatgctattttgcagtttggcgaa
gatgaggaagattcttccttggcgggatttttagccagtgcatcccttgcgtcggattta
gataatttagacgaaggggaagcggcggtttctttgatgactcttcattcctcgaaaggg
ttagaatttccggttgtctttttagtgggaatggaagatggattatttccgaatttccgc
agtttgaacgatccgaaagcaattgaggaggaacgacggttgtgttatgtcggcattacc
cgcgcccaagaacgactctttttaacgatggctagcgaacggcgattgtgggggtcttac
gaacgatcgcgtccgtcccgtttcttggcggagttacctcgggaattgttaatgggaaat
gcggtggcgaagcaacgacgatcgcgcgcgacggcaaagaaaattgctaaaggatcggcg
gcgggggtggctaattggaatgtcggcgatcgcgtggttcacgagactttcgggccgggt
caaatttcccatgttttcggaactggagaaaagctggccttggcgatcaagtttcctcgg
ttgggtcagaagattatcgatccgaaaaatgcaccgttgcaaaaactttag
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