Oxynema aestuarii: HCG48_15300
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Entry
HCG48_15300 CDS
T06528
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oxy
Oxynema aestuarii
Pathway
oxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCG48_15300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oxy03019
]
HCG48_15300
03400 DNA repair and recombination proteins [BR:
oxy03400
]
HCG48_15300
Enzymes [BR:
oxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCG48_15300
Messenger RNA biogenesis [BR:
oxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCG48_15300
DNA repair and recombination proteins [BR:
oxy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HCG48_15300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
QIZ71781
UniProt:
A0A6H1TYX7
LinkDB
All DBs
Position
3766234..3767700
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AA seq
488 aa
AA seq
DB search
MSPSGADEYDRVRAKLREIWGYEDFRPPQGEIVRTLLEGRDAAIVLPTGGGKSICFQLPA
LLQTGLTLVVSPLVALMENQVQELRDRRLPAALLHGQLDRRVRRDTLNAIERNRLRLLYL
SPETLLSPPVWERLCQPQVRINGSILDEAHCLVQWGDTFRPAYRRLGAVRPALLKTKPPG
TKIAIAAFTATADPEAQQTIATVLGLQRPRQFLYSPYRENLYLALKVAWTPRDRRQKLFK
FIQSQGKTSGLVYVRTRGDSEKLAREASARGYAVAAYHAGLSGEERRAIERGWIENQLQF
VVCTSAFGMGVNKPDVRWVAHFQAPALLSEYVQEVGRAGRDGRSARALTLVSECTGLLDP
EDKQRRESVRRQQREIFKRSRQLAKQFPQQGEVEAIARQFREGAIALSVLHCCGGLQWRD
PFHYQLVPGGGSGRGVPAIDATGTMARYVKWRGCRWQFLLAAFGFKSESAVMHCGHCDNC
FPHKFNSS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccatcgggtgccgacgaatacgatcgcgtgcgcgcgaaactgcgcgaaatttgg
ggatacgaggattttcgaccgccccaaggggaaatcgttcgcacgttgttagagggacgc
gatgcggcgatcgtgctgccgacggggggcggtaagtcgatttgtttccaacttccggcg
ctgttacaaacgggcttaaccctggtggtgtcgccgttggtggcgttgatggagaatcag
gtgcaggaattgcgcgatcgccgtcttcccgccgccttattacacggacaactcgatcgc
cgcgtccgtcgggatacgttaaatgctatagaacgtaaccgcttgcgcttgttataccta
tccccggaaactttgctcagtcctccggtctgggagcgtttgtgtcagccccaggtcaga
attaacggctcgatcctcgacgaagcccattgtctggtgcagtggggcgatacctttcgt
ccggcgtatcggcgcttgggggcggttcgtccggcgctgttgaaaacgaagccgccggga
acgaaaatcgcgatcgccgcgtttaccgcaaccgccgatcccgaagcccagcaaacgatc
gcgacggtgttggggttacaacgcccccgtcagttcctctacagtccctatcgagaaaat
ttatacttagcgttaaaagtggcttggacgccgcgcgatcgccgtcagaagttattcaaa
tttattcaaagtcaggggaaaacctcgggattggtttacgttcgcacgcggggagacagt
gagaaactcgcccgggaggcgagcgcacgcgggtatgcggtggcggcgtatcacgcgggg
ttgagtggggaggaacggcgggcgatcgaacggggttggatcgagaatcagttgcaattt
gtggtctgtacgtcggcgttcgggatgggggtcaacaagccggacgtgcgctgggtggct
cactttcaggcgcccgccttactctcggagtacgtgcaggaagtgggacgggcgggacgg
gacggacgatcggcgcgggcgttaaccttagtgagcgaatgtactgggttgctcgatccc
gaggacaaacaacggcgagaatctgtcaggcgccagcagcgagagatcttcaagcgatcg
cgacagttggcgaagcagttcccgcagcagggggaggtcgaggcgatcgcgcggcagttt
cgcgagggggcgatcgccctgtcggtactccattgttgcggagggttacaatggcgagac
ccgtttcactatcagctcgttcccggcggcggttccggtcgcggcgtacccgcaatcgat
gctacgggaacgatggcgcgttatgttaagtggcgcggttgtcgctggcagtttttactc
gccgcctttggtttcaagagcgaatcggcggttatgcattgcggacattgcgataattgt
tttccgcataaattcaactctagctaa
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