Oxynema aestuarii: HCG48_17005
Help
Entry
HCG48_17005 CDS
T06528
Name
(GenBank) trans-splicing intein-formed DNA polymerase III subunit alpha C-terminal partner DnaE-C
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
oxy
Oxynema aestuarii
Pathway
oxy03030
DNA replication
oxy03430
Mismatch repair
oxy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCG48_17005
03430 Mismatch repair
HCG48_17005
03440 Homologous recombination
HCG48_17005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oxy03032
]
HCG48_17005
03400 DNA repair and recombination proteins [BR:
oxy03400
]
HCG48_17005
Enzymes [BR:
oxy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HCG48_17005
DNA replication proteins [BR:
oxy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HCG48_17005
DNA repair and recombination proteins [BR:
oxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HCG48_17005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HHH_6
tRNA_anti-codon
HHH_3
DUF655
Intein_splicing
Nitr_red_bet_C
Motif
Other DBs
NCBI-ProteinID:
QIZ72065
UniProt:
A0A6H1U084
LinkDB
All DBs
Position
4199202..4200551
Genome browser
AA seq
449 aa
AA seq
DB search
MVKIVSRRRVGTERVYDIGVVRDHNFLLLNGLVASNCFNKSHSTAYGYVTYQTAYLKANY
PVEYMAALLTANSGDKDKVNKYIANCGSMAIEVEQPDINRSGVDFTPVEGKILFGLSAVR
NVGDAAIAAILQAREKDGPFKSLEDLCDRVDLRTVNRRGLESLIQCGALDCLNPNRRQAI
EHLEAVIKWAGERARDRDSGQGNLFDLLGNGNNNGAKADNGQFEGAPKPPQVPDYPQQEK
LRLEKELLGFYVSDHPLKDIQKSAKVLAPVELGQLEDQRQDAYISAVVMLTEVKPIVTKK
GDRMAIVQMEDLTGSAEGVVFPKSYERIAAHIQPDTRLIIWGKCDRRDDKIQIIVNDVEP
VEQVRMVMVELTPDQAGDMQQSHNLRTILQEQVGDKDKAKIPVIAIVQGGGRRQLVRFGA
SFRVQDSEGAVEALCNAGFPARASSLTER
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
gtggttaaaattgtttcgcgtcggcgcgtcggaacggagcgggtttacgatattggggtg
gttcgggatcataatttcttgttgttaaatgggttggtggcgtcgaattgctttaataaa
tcccattcgacggcttacggttacgtcacttatcaaacggcgtatttaaaagcgaattat
cccgtcgaatatatggcggcgttgctgacggcgaacagtggcgataaagataaggtgaat
aaatatatcgccaactgtggaagtatggcgattgaggtggagcagccggatatcaatcgc
tcgggggtggattttactccggtagagggtaaaattttattcgggctgtcggcggtgcgc
aatgtgggggatgcagcgatcgccgccattttacaggcacgagagaaggacggaccgttt
aaatccttggaagatttatgcgatcgcgtggacttgcggacggtcaaccgtcggggattg
gaatccctgattcaatgcggagccttagactgcctcaatcccaatcgcagacaggcgatc
gagcatttagaagcggtgattaaatgggccggagagcgggcccgcgatcgcgattccggt
cagggcaacctgttcgacctgctcggcaatgggaataataatggagctaaggcagacaac
ggccaatttgaaggggcgccaaaaccgccacaagtccccgattacccgcaacaagaaaaa
ttgcgcttggaaaaagaactactcggcttctacgtttccgaccatcccctcaaagacatt
caaaaatcggccaaagtgctagcgcctgtggagttgggacagttagaagaccagcgccaa
gacgcctacatcagcgcggtggtgatgctgacggaggtcaaaccgatcgtcaccaagaaa
ggcgatcgcatggcgatcgtgcagatggaagacttgaccggatcggcggaaggggtggtc
tttcccaagtcttacgaacggattgcggcgcatatccaaccggacacgcgcctgattatt
tgggggaaatgcgatcgccgcgacgacaaaatccaaattatcgtcaacgatgtcgaaccc
gtggaacaagtccgcatggtcatggtggaactgaccccagaccaggcgggagatatgcaa
caaagccacaacctgcggacgatcctgcaagaacaagttggcgacaaagacaaagcgaaa
attccggtgatcgcgatcgtccaggggggcggacggcggcaactcgtgcgcttcggcgcc
agtttccgagtgcaagatagcgaaggcgcggtagaagccctgtgtaacgcagggttcccg
gcgcgcgcttcttcgctgactgagagatag
DBGET
integrated database retrieval system
