Oxynema aestuarii: HCG48_19260
Help
Entry
HCG48_19260 CDS
T06528
Symbol
sbcC
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
oxy
Oxynema aestuarii
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oxy03400
]
HCG48_19260 (sbcC)
DNA repair and recombination proteins [BR:
oxy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HCG48_19260 (sbcC)
Archaeal homologous recombinant proteins
HCG48_19260 (sbcC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_15
Rad50_zn_hook
AAA_27
ABC_tran
AAA_29
AAA_21
AAA
Baculo_PEP_C
RsgA_GTPase
DUF4739
Motif
Other DBs
NCBI-ProteinID:
QIZ72458
UniProt:
A0A6H1U0R1
LinkDB
All DBs
Position
complement(4805282..4808353)
Genome browser
AA seq
1023 aa
AA seq
DB search
MIPHQLTLKNFLSYREATLNFQGLHTACICGPNGAGKSSLLEAIAWSIWGNSRVATEDDI
IRAGEKEARVDFIFQTNQHIYRVIRSRQRGQSAALEFQMATSEMPDNYTARDLVDRLAFR
SLTERGVRATQEKIIEHVKLDYDTFVNSSYLRQGRADEFMLKRPSERKQVLARLLRLDRY
DELSERSKERSRQAKANEQVLEQSLEAIAHQLQDRAEIGDRLAQVEAQIAEAQAAQQRDR
DRLAQLQTRQLQRQNWQNQLKNCRQRDHQLAGDCDRLQGDLSLTERRLHELDALLQQADE
ISAGYAEFEQLQKREESEAAKFHAYQDAQHRRSQLQQELRDYLSSLETQLASARANYDSL
EERKAELHESLDRLPEVESAIAQLQAARDRLATLDELKERVTPAIARRQELQTQLDRLQA
RLTARLEEISGQIHRLQSEVQTSQVLRETALEVGYQIEELEKKRVYQQRVREKGLERRHF
MERLQAHQRDYETQLAELDRKIEMLQVPDAICPLCDRPLDEHHWDLVVHKHGKEQQEIID
RLWVIREQLAVSDREIQILRDEYRQLDRQLADYDRLRERRGSLQAQLEQADDRRSRLEQL
EIERQQLERSIASGDYGGELTLELEQLDRAIAQLNYNDRDHALAFNEEKRWRWAEIKQGQ
LQQARRELENLQQRQPELQRQIAELETALTREREDSDLDRELQQLERSIAAIAYDRREHQ
ALREALQQARLWEPRMAQLQQARQRQPELADRSRELSERLQGRSRDRQAIVAQIEQLQHQ
LAETPDATEEIDNISRQIERSNAQLQQQFGTQGRLQQQQQHLDRLQQTYEQKQRDLADAK
RQLRVYQELATAFGKNGIQALTIENVLPQLEAETNQILARLSGNQLHVQFVTQRVGKSRR
KSAKKNPKLIDTLDILIADARGTRPYETYSGGEAFRINFSIRLALARLLAQRSGTALQML
IVDEGFGTQDNQGCDRLIAAINAIAPEFACILAVTHMPQFKEAFQSRIEVRKTEKGSQLS
LSF
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgattccccaccaactcactctgaaaaatttcctcagctaccgcgaagccaccttaaac
tttcaggggttgcataccgcttgtatttgcggaccgaacggagccgggaaatcttccctg
ctagaggcgatcgcctggtcgatctggggaaatagccgcgtcgccaccgaagatgacatc
attcgcgccggagaaaaagaagcccgggtcgattttatttttcaaaccaaccaacacatt
tatcgcgtcattcgatcgcgccaacggggccaatccgccgccctcgaatttcaaatggcc
acgtcagaaatgccggacaattatacggcaagggatctcgtcgatcgcctcgcctttcga
tcgctgaccgaacgcggcgtgcgcgcgacccaagagaaaattatcgaacacgtcaaactc
gattacgatacctttgtcaactcctcctacttgcgtcagggacgggccgacgagttcatg
ctcaagcgtcctagcgaacgcaagcaagtgttagcgcgcctgttacgcctcgatcgctac
gacgaactctcggagcgatcgaaagagcgatcgcgccaggcgaaagccaacgagcaggta
ctcgaacagagtttggaagcgatcgcccatcagttgcaagatcgggccgagatcggcgat
cgcctcgcccaggtagaagcccaaatcgccgaagcgcaagccgcgcagcagcgcgatcgc
gatcgcctcgcccagttgcaaacccggcaacttcaacgtcaaaactggcaaaatcagtta
aaaaattgccgccaacgcgaccaccaactcgccggagactgcgatcgcctccaaggggac
ctttccctgaccgaacgacgcttgcacgaactcgacgccttattgcaacaagccgacgag
attagcgccggatatgccgaattcgagcaactgcaaaagcgcgaggaaagcgaagccgcc
aagttccacgcctaccaagacgcccaacaccgtcgctcgcaactacaacaagaactgcgc
gattatttatcttcgttagaaacccaactcgcctcagcccgcgccaattacgacagcctc
gaagaacgaaaagccgaactgcacgaatccctcgaccgtctccccgaagtcgaaagcgcg
atcgcccaactgcaagccgcgcgcgatcgcctcgccaccctcgacgagctcaaagaacgg
gtcacccccgcgatcgcccgacgacaagaattacaaacccaactcgatcgcctgcaagcc
cgtctgacggcgcggttggaagaaattagcggccaaatccaccgcctgcaatcggaagtc
caaaccagccaagttttacgagaaaccgccctcgaagtcggctaccaaatcgaagaattg
gaaaaaaaacgagtctaccagcagcgcgtccgcgaaaaaggactcgaacgccgccatttt
atggaacgcttgcaagctcaccagcgcgactacgaaacccaactggccgagttagaccgc
aaaatcgagatgttgcaagttcccgacgccatctgtcccttgtgcgatcgccccttggac
gaacaccactgggatttggtcgtccacaaacacggcaaagaacagcaagaaattatcgat
cgcctctgggtgattcgcgaacaactcgccgtctccgatcgcgaaatccagattttacga
gacgaataccgccaactcgaccgccaactcgccgattacgaccgcctgcgcgaacggcgc
ggttccctacaagctcaattagaacaagccgacgatcgccgatcccgactcgaacaactc
gaaatcgaacgacagcagttagagcgatcgatcgcctccggagactacggcggcgaattg
accctcgaattggagcaactcgatcgcgcgatcgcccaactgaattacaacgatcgcgac
cacgccctcgctttcaacgaagaaaagcgctggcgctgggccgaaatcaaacagggtcaa
ttacaacaagcgcgccgggagttagagaacttgcaacagcgccaacccgaactgcagcgc
caaattgccgaactcgaaaccgccttaacccgcgaacgggaggactccgacctcgatcgc
gaactgcagcagctagagcgatcgatcgccgccattgcttacgatcgccgcgaacaccaa
gccctacgcgaagccctccaacaagcccgcctctgggaaccgcgcatggctcaattgcaa
caagcccgacagcgccagcccgaattggccgatcgatcgcgcgaactctccgaacgcctc
caggggcgatcgcgcgatcgtcaggcgatcgtcgcccagatcgaacaactccagcaccaa
ctcgccgaaacccccgacgccaccgaggaaatcgacaacatttccaggcagatcgagcga
tcgaatgcccaattgcaacaacaattcggcacccaaggacgcctccaacaacagcaacaa
cacctcgatcgcctccaacaaacttacgaacaaaaacaacgagacctcgccgacgccaaa
cgccaacttcgggtttaccaagaactcgccaccgccttcggtaaaaatggcatccaagcc
ctcactatcgaaaacgttttaccccaattagaagcagaaaccaatcaaattctcgcccga
ctcagtggcaatcaacttcacgtccaattcgtcacccaacgagtgggcaaaagccggaga
aaatcggctaagaaaaatcccaaattaatcgacaccttagatattttaattgccgacgcc
cgaggcacccgcccctacgaaacctattccggcggcgaagcatttagaattaatttttcg
atccgtttggcattagcccgcttactcgcccaacgatccggaacggccttacaaatgctg
atcgtcgatgaaggattcggaacccaagataaccaaggatgcgatcgcctcattgccgcc
atcaacgcgatcgcccccgaatttgcctgcatcctcgccgtcacccacatgccccaattt
aaagaagcctttcaatcgcgcatcgaagttcgcaaaaccgagaagggatcccaattaagt
ttatcattttag
DBGET
integrated database retrieval system
