Oxynema aestuarii: HCG48_20220
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Entry
HCG48_20220 CDS
T06528
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oxy
Oxynema aestuarii
Pathway
oxy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCG48_20220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oxy03021
]
HCG48_20220
03400 DNA repair and recombination proteins [BR:
oxy03400
]
HCG48_20220
Enzymes [BR:
oxy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCG48_20220
Transcription machinery [BR:
oxy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCG48_20220
DNA repair and recombination proteins [BR:
oxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCG48_20220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
RPOC_hybrid
DUF3043
Motif
Other DBs
NCBI-ProteinID:
QIZ72630
UniProt:
A0A6H1U393
LinkDB
All DBs
Position
5055335..5059426
Genome browser
AA seq
1363 aa
AA seq
DB search
MAEKKSMIFRNRVVNKGQLKNLIYWSFTNFGTARTAEVADRLKDLGFRYATKAGVSISVD
DLMIPPSKRELLDEAEREIYETETRYTRGEITEVERFQKVIDTWNSTSENLKDEVVRHFK
SSDPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGQIIGLPIKTNFREGLTVTEYII
SSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREIDCSTMRGIPLRAMTDGDRVLIP
LRDRLLGRALARDVIDPKTGEPVSSIQFTSRDKEPRRIYAVRNQPISDELARAIEAAGVE
EVFVRSPLTCEATRSVCQHCYGWSLAHAHLVDMGEAVGIIAAQSIGEPGTQLTMRTFHTG
GVFTGEVARTVVAPFDGTVRYEASMRVRPFRTRHGQDAFVVESPNAQLSVVDGQGRSESF
SLTQGSTVFVADGGAIAATKIVAEVLAAGRSSRKTTEKATMDVDADLAGEALFADLVPEE
KKDRQGNTTRIAQRGGLIWILSGEVYNLLPGAEPVVKNGDRVEAGSVLAETKLVTENGGV
VRLAPDQKTDGPREVEIITASVLLDRAIVRSESMGGHDRYIIETAGNQLFSLKATPGTKV
LNHQVVAELIDERYRTQTGGILKYGGVEVQKRGKAKQGYEVVKGGTLLWVPEECHEVNKD
ISLLQVEDGQYVEAATEVVKDIKCSSSGVVEVTQKNDILREITIKPGELHMVDDPDEVAV
ESGQLAYPGQEVVPGLTVDELRYVEHVETPEGPAILLRPAIEFAVPDEPAIPSQDSIGEA
NDNGIIRLRAVQRIPYKDGERVKSVEGLELLRTQLILEIEKEAPQLAADIELVPDPEDPE
LMRLQLVILESLVIRRDVAADPTQGSTATRLLVSDGDEIAPGAVVARTEIQCKEAGEVQG
IREGGEAIRRVLVVREADLVKVTTTGEPSCQPRDFLVSGVEVAPGEVLEESGQVMAIAPS
PEGNGYEVTLRTGRPYRVSPGAVLHVEDGSLVQRGDNLVILVFERAKTGDIIQGLPRIEE
LLEARKPKEACILAKGAGTAQVIYNDDESVEIKVVEPDGNVEDYPIGPGQNALVSDGEQV
EAAQALTDGPANPHEILEIHFKVNQERLGVYEAALESFAKVQTFLVNEVQSVYQSQGIDI
SDKHIEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMSITGGAPAEYTPMLLG
ITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNAYEE
LQASDLDVGLAMSESVLDEEDDLQDIVLDDRTARSYSTNGMFEAMGDDDGEQESSQSSKR
RSRASKDEDEEFGSFDDDEELIGGDFDEDDNDDLDDDDDDDEM
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaaaaaatcgatgattttccgcaatcgagtggtcaacaaaggacaactcaag
aatttgatttattggtcgtttaccaacttcgggacggcccggacggcggaagtggcagac
cgtttgaaagacttggggtttcgttatgcgacgaaagccggagtgtcgattagcgttgac
gatttgatgattcccccgagcaaacgggaactcctcgacgaagccgaacgggagatttac
gaaaccgagacgcgctatacccgaggggagattacggaagtcgagcggttccaaaaagtg
atcgatacgtggaactcgacgagtgagaacctcaaagacgaagttgtgaggcactttaaa
tcctccgaccccctcaatagtgtatacatgatggcgtttagcggggcgcgggggaatatc
tcccaagtgcggcagttggtgggaatgcggggcttgatggcggacccgcaaggacagatt
atcggcttgccgatcaaaaccaacttccgggaggggctgacggtaacggagtatattatt
tcgtcctacggggcgcgcaagggcttggtcgatacggcgctgcggacggcggactcgggt
tacctgacccggcgcttggtggacgtgtctcaggacgtgatcgtgcgcgagatcgattgc
tcgacgatgcgggggattccgttgcgggcgatgaccgacggcgatcgcgtgttgattcca
ctgcgcgatcgcctgctgggacgagccctggcgcgcgatgtcatcgatccgaagaccgga
gaacccgtcagtagcattcagtttacgagccgggataaggaaccgagacggatttatgca
gttcgcaaccaaccgatttccgacgagctggcgcgggcgatcgaagcggcgggagtcgag
gaagtgttcgtgcgatcgcccctgacttgcgaggcgacgcgatcggtgtgccagcattgc
tacgggtggagcttggcccacgctcatttagtcgatatgggcgaggcggtcggcatcatc
gcggcacagtcgatcggggaaccagggacccaattgacgatgcggacgttccacaccggg
ggcgtgttcaccggggaggtggcgcgaacggtggtggcgccgttcgacggtaccgtgcgt
tacgaagcgtcgatgcgggtgcgaccgttccgcacgcgccacggtcaggatgcgttcgtg
gtggaaagccccaacgcgcagttgagcgtggtggacggtcagggtcgcagtgaaagtttc
agtctgacccaaggttcgacggtgttcgtggccgatggcggggcgatcgccgccactaag
atcgtcgccgaggtcctcgcggcgggccgttcttcgcgcaagacgacggagaaggcgacc
atggacgtggatgcggatttggccggagaagcattgttcgccgacctggtaccggaagag
aaaaaagaccgccaggggaatacgacacggatcgcccaacgcggcggcttgatttggatt
ctctccggtgaagtgtataacttgctgcccggggccgaacccgtggtcaagaatggcgat
cgcgtcgaagccgggagcgtgctggcggaaacgaagctcgtgaccgaaaatggcggcgtc
gtgcgcttggcgccggaccagaagaccgacggcccgcgcgaggtcgaaattattacggcg
tcggtcctgctcgatcgcgcgatcgtgcgatcggaatccatgggaggtcacgaccgttac
attatcgaaacggcgggcaatcagttgttctccctgaaagcgaccccggggacgaaagtc
ctcaaccatcaagtggtcgccgagttgatcgacgaacgctaccgcacccaaaccgggggc
atcctcaaatacggcggggtagaagttcagaagcgcggcaaggcgaagcaaggctacgaa
gtcgtcaaaggcgggaccttgctctgggtaccggaagaatgccacgaggtcaataaagat
atttccctgttgcaggtagaagacggccagtacgtcgaagccgcgaccgaggtggtcaaa
gatatcaagtgcagcagttccggggtggtcgaagtcacccaaaagaacgatattttgcgc
gagattacgatcaagcccggggaactgcacatggtggacgaccccgacgaggtggcagtg
gagtcgggtcagttggcttatccgggccaggaagtggtcccggggctgaccgtggacgag
ttgcgctatgtggaacacgtggagacgcccgaaggtccggcgattctgctgcgtccggcg
atcgagtttgcggtaccggacgagcctgcgattccgtctcaggattcgatcggggaagcc
aacgacaacggcatcattcgcctgcgcgcggtgcaacggattccctataaggatggggaa
cgggtcaagtccgtggaaggcttggagttgttacgcacccagttgattctcgaaattgag
aaggaagcgccgcagttggcggcggatatcgaattggtgccggatccggaagatccggag
ttgatgcgcttgcagttggtgattctcgaatcgctggtgattcggcgcgacgtggcggcg
gatccgactcagggcagtacggcgacgcgcttgctggtgagtgacggcgacgaaatcgcc
cccggggccgtggtcgcgcgcacggaaattcagtgcaaggaagctggggaagtgcaaggc
atccgcgagggtggcgaggcgatccggcgggtgctggtagtgcgcgaggcggatttggtc
aaggtgacgacgacgggagaaccgagttgtcagccgcgagattttttggtctccggggtg
gaagtggcgccgggagaagtcctggaagagtcgggtcaggtgatggcgatcgcgccgtcg
ccggaaggcaacggatacgaagtgactttgcgaaccggacggccttaccgggtttcgccg
ggggcggtcctgcacgtggaagatggctcgttggtgcaacggggcgataatttggtgatt
ttggtgttcgagcgcgccaagaccggggatatcattcaaggtttgccccggatcgaggaa
ttgctcgaagcgcgcaagcccaaggaagcgtgtattttagcgaagggcgccgggacggct
caggtgatttacaacgacgacgagagcgtcgaaatcaaggtcgtggagccggatggcaat
gtcgaggactatccgatcggcccggggcagaatgctctggtgtccgatggggaacaagtg
gaggcagcgcaagcgctgacggacggtccggcgaatcctcacgagattctggagatccat
ttcaaggtcaatcaggaacgcttgggggtttacgaggcggcgttggaaagtttcgccaag
gtgcagacgttcttggtcaacgaggtgcagtcggtgtatcaatcccaagggatcgatatt
tcggacaagcatatcgaggtgatcgtgcgtcagatgacgaataaggttcgcatcgacgac
ggcggcgatacgacgatgctgccgggtgagttggtggagctgcgccaggtggaacaggtc
aacgaggcaatgtcgattaccgggggcgctccggcggaatatacgccgatgttgctcggg
attacgaaggcgtcgctgaatacggacagtttcatttcggcggcgagtttccaggagacg
acccgggtgttgaccgaggcggcgatcgagggcaagtccgattggctgcgcggtttgaaa
gaaaacgtgattatcggtcgcttgattccggcggggacgggcttcaatgcttacgaggag
ttgcaagcgtcggatctcgatgtcggtttggcaatgtcggagagcgtgttggatgaggag
gacgatttacaagatatcgttctcgacgatcgcacggctcgctcttacagtaccaatggc
atgtttgaggcgatgggggatgacgatggcgaacaagagtcgtctcagtcttccaagcgg
cgatcgcgcgcctcgaaagatgaggacgaggagtttggctccttcgacgacgatgaggag
ttaatcggcggcgacttcgacgaggacgataacgacgatctcgatgacgatgacgacgac
gatgaaatgtaa
DBGET
integrated database retrieval system
