KEGG   Oxynema aestuarii: HCG48_23490
Entry
HCG48_23490       CDS       T06528                                 
Name
(GenBank) RtcB family protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
oxy  Oxynema aestuarii
Brite
KEGG Orthology (KO) [BR:oxy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:oxy03016]
    HCG48_23490
Enzymes [BR:oxy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     HCG48_23490
Transfer RNA biogenesis [BR:oxy03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    HCG48_23490
 Prokaryotic type
   tRNA splicing ligases
    HCG48_23490
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: QIZ73194
UniProt: A0A6H1U2X9
LinkDB
Position
complement(5893530..5894711)
AA seq 393 aa
MSYETLNLKTPSPVLSWAGHQLGDLESKMAQNVASLPFVFKHVALMPDVHLGKGALVGSV
IATEEALIPAAVGVDIGCGMMALQMPFTGDRLDGKLKTIRQQIEAAIPVGFNENKNVETS
VTNWMGWRQFKDLHRGVARLEGKALKQMGSLGGGNHFIEICLDEDNNVWLMLHSGSRHIG
NMLAQYHIDTAKELAKLAQIELPDRDLAYFVAKTPEFDAYWRDLQWAQDYARFNRKVMMD
RLKRIVEQQVAGGKPLQPKLVVNCHHNYAEKEVHFDREVYVTRKGAVRARENDYGIIPGS
MGAKSYIVKGKGNAESYCSCSHGAGRLMSRSKAKKSFTLDDLVAQTDGVECRKDKGVIDE
IPGAYKPIDRVMAQQSDLVEVVATLKQVLCVKG
NT seq 1182 nt   +upstreamnt  +downstreamnt
atgtcttacgaaaccctcaacttaaaaacccccagtccggttctctcctgggccggacac
caactcggcgatctcgaatcgaaaatggcccaaaatgtggcctccttacccttcgtcttc
aaacacgtcgccctcatgcccgacgttcacctcggtaaaggcgccctggtcggttccgtc
atcgctacggaagaagccttgattcccgccgccgtcggcgtcgatatcggttgtggcatg
atggcactacaaatgccgtttacaggcgatcgtctcgacggcaaactcaaaaccattcgc
caacagatcgaagccgcgattcccgtcggcttcaacgaaaacaaaaacgtcgaaacctcc
gtgaccaattggatgggatggcgccaattcaaagatctacatcgcggcgtcgcccgtctc
gaaggtaaagccctcaaacaaatgggaagcctcggcggcggtaaccacttcatcgaaatc
tgtctcgacgaagacaacaacgtttggttaatgttgcactccggttcccgtcatatcggc
aacatgctcgcccaatatcatatcgataccgccaaagagctagcgaaattagctcagatc
gagcttcccgatcgcgatttggcttacttcgtcgccaagactcccgagtttgacgcctac
tggcgcgatttgcagtgggcgcaagattacgcccgcttcaaccgcaaagtaatgatggac
cgcctcaagcggattgtcgaacaacaggtcgctggtggcaaacccctccaaccgaaactc
gtggttaactgtcaccacaactacgccgagaaagaggttcatttcgatcgcgaagtctac
gtcacccgaaaaggcgccgtacgcgcccgagaaaacgactacggtattattcccggttcg
atgggggcgaaatcttacatcgttaaagggaaaggtaatgccgaaagttactgctcttgt
tcccacggcgccggacgcctgatgtcgcgcagcaaagcgaaaaaatctttcaccctcgac
gatctcgttgctcaaaccgacggggtagaatgtcgtaaagataaaggcgtcatcgatgaa
attcccggcgcctacaagcccatcgatcgggtcatggcccagcagtccgatttagtcgaa
gtcgtcgccactctcaaacaggtgttgtgcgtgaaaggctga

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