Prosthecochloris aestuarii: Paes_0289
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Entry
Paes_0289 CDS
T00732
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paa
Prosthecochloris aestuarii
Pathway
paa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Paes_0289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paa03021
]
Paes_0289
03400 DNA repair and recombination proteins [BR:
paa03400
]
Paes_0289
Enzymes [BR:
paa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Paes_0289
Transcription machinery [BR:
paa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Paes_0289
DNA repair and recombination proteins [BR:
paa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Paes_0289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACF45346
UniProt:
B4S498
LinkDB
All DBs
Position
305768..310267
Genome browser
AA seq
1499 aa
AA seq
DB search
MIFSQGSSPFKGDFSKIKFSIASPESVLAHSRGEVLKPETINYRTFKPERDGLMCEKIFG
PTKDWECYCGKYKRVRYKGIICDRCGVEVTMKSVRRERMGHISLAVPVVHTWFFRSVPSK
IGALLDLSTKELERIIYYEVYVVINPGDPGEKQGIKKLDRLTEEQYFQIITEYEDNQDLD
DDDPAKFVAKMGGEAIHTLLKGLNLDESAVGLRKVLKESGSEQKRADALKRLKVVEAFRK
SYEPQKKTRKKPGGLFPEDEMPEPYIFEGNKPEYMVMEVIPVIPPELRPLVPLEGGRFAT
SDLNDLYRRVIIRNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESN
RPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKSMAIELFQPFV
IRRLVERGIAKSVKSAKKLIDKKDPIVWDVLEKVIDGRPVLLNRAPTLHRLGIQAFQPTL
IEGKAIQIHPLVCTAFNADFDGDQMAVHVPLSQEAQLEASLLMLSSHNLILPQSGKPVTV
PSQDMVLGMYYLTKSRIGENGQGNIFYSNEEVLIAHNEERLGLHALVFIKYDGHVEQKFD
PVRLLDIISDDESEKKAWLKKEIEAKRLLVTTVGRVIFNQYVPEKIGFVNKVIDKKGAKE
LISKICSEVGNVQAAEFLDNIKQVGYHYAMKGGLSIGLADAIIPEAKIQLIKKATKESNK
ILREYNRGTLTENERYNQIVDVWQKVTNLVAEESYQKLRKDRVGFNPLFMMLDSGARGSR
EQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFVSTHGARKGLSDTS
LKTADAGYLTRRLHDVAQDVIVTIDDCGTTRGLHVERSIEEETGGQIKFSDKIRGRVASR
DIWDTLKDEIVVPAGGIITEDIADAIQANIGVLEADIRSVLTCEAKQGICSKCYGTNLAV
HKIVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAQGGIAETETKAVYEGQVEFENIRT
VEQETINEDGMPEVRILVIQKNGRINIVDPDSGKVLKRHDVPHGASLHRSVGDLVKKEDV
LFSSEPNSTQIIAELEGYVKFADIEKGVTYKEEVDPQTGYVQHVIINWRSKLRASETREP
RIMIVSESGEILKTYPVPIKSNLFVEDNKKVSIGDILAKVPRNLDRVGGDITAGLPKVTE
LFEARIPSDPAIVSEIDGYVGFGSQRRSSKEIKVKNEFGEEKTYYVQVGKHVLANEGDEV
TAGEPLTDGAISPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEISDKHLEVIVRQMLQK
VRVEEPGDTELLPGDLIDRTVFIEANTAIAEKVRVIDKGDAPARIQEDQLYKLKEITKLN
RELRKNSKSLIVVEPAIQATSHPVLLGITSAALQTESVISAASFQETTKVLTDAAVAGKI
DNLLGLKENVIVGKLIPAGTGLKAYRKLELNKVYPEAAEIAVPEVDEAAPASSDDDAAE
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atgattttttcacagggatcatcgcctttcaaaggtgatttttcaaagataaaattcagc
atcgcttcgccagaaagcgttcttgctcattcacgcggagaggtgctgaagcctgagacg
ataaactaccgtacattcaagcccgaacgtgacggcctgatgtgtgagaagattttcggt
cctaccaaggactgggaatgctactgtggtaaatataaaagggtgcgttacaaaggtatt
atctgtgacagatgcggtgttgaagtgaccatgaaaagtgtacgccgcgaacgaatgggg
catatttcgcttgctgttccggttgtgcatacatggtttttccgttcggttcccagcaag
atcggtgctttgctcgatctttcgacaaaggagcttgaacgtattatttattatgaggtc
tatgtcgttatcaatcctggtgatccgggagaaaaacaggggatcaagaagcttgaccga
ctgactgaggaacagtatttccagatcattaccgaatacgaggacaatcaggacctcgat
gacgatgatccggccaagtttgtcgccaaaatgggcggtgaagctattcatacccttctc
aagggtctcaacctcgacgagtcggcagtcgggctgcgcaaggtgctcaaggagagcggt
tcagagcagaaaagggcagatgcgctcaaacgcctcaaagtggtcgaagctttcagaaag
agctacgaaccgcagaagaaaacccggaagaaacctggcgggcttttccctgaggacgag
atgcccgagccctatattttcgagggtaacaagccggaatatatggtgatggaagttatt
cccgtcattcccccggaacttcgcccgctggttccgctggaaggcggtcgatttgcgaca
tctgatctcaatgatctgtatcgcagagtcattatccgtaacaatcgtcttaaaaagctt
attgatattcgtgctcctgaagttatcctgcgcaacgaaaaaagaatgctgcaggaagcc
gtcgatgcactctttgataactcccgcaaggccaatgccgtcaaaaccggggagtcgaac
agacctctgaagtcgctttcagatgcattgaaaggtaaacagggccgtttccgtcagaat
cttcttggtaagagggttgactactccggccgttccgttatcgttgtcggccctgagctc
aagctgcacgagtgcggtcttcctaaaagtatggcaatcgaacttttccagccctttgtc
attcgacgcctggttgagagaggtattgccaaatcggtgaagtctgccaagaaactgatt
gacaagaaggatcctatagtgtgggatgttcttgaaaaggttattgatggtcgtccggtt
ctcctcaaccgtgcaccgacgcttcatcgtcttggtatccaggcgtttcaaccgaccttg
atcgaaggaaaagcaatccagatccatccgctggtctgtacggcattcaacgctgacttc
gatggtgatcagatggctgtgcatgttccgctttctcaggaagcgcagcttgaggcatcg
cttctgatgctttcatcgcataaccttattctgccacagtcgggtaagcctgttactgtt
ccttctcaggacatggtcctgggtatgtactacctgaccaaatcaaggattggcgaaaat
ggtcagggcaacattttctacagcaatgaagaggtcctgatcgctcataatgaagagcgt
ctgggtcttcatgccctggtgttcatcaaatacgatggccatgtggaacagaagttcgat
ccggtcaggttgcttgatattatttcagatgatgagtctgaaaagaaagcgtggctgaaa
aaagagatcgaggcgaaaaggctcttggtgactaccgtcggtcgtgtcattttcaaccag
tacgtgccagagaaaatcggcttcgtcaacaaggtgatcgacaagaaaggcgccaaggaa
cttatttcgaagatatgcagcgaggtcggtaatgttcaggctgcagagtttcttgacaac
atcaagcaggtcggttatcattacgccatgaaaggcggactgtccattggacttgccgac
gccatcattcctgaggccaagattcagctgatcaagaaagccacaaaagagagtaacaag
attctccgcgagtacaacaggggtaccttgacggaaaacgaacgctataaccagattgtc
gatgtctggcagaaggtgacgaaccttgtggctgaggagtcttaccagaagcttcgcaaa
gatcgtgtcggattcaacccgctcttcatgatgcttgattccggtgcccgaggctcgcgt
gaacaggttcgtcagcttaccggtatgcgcggtcttattgccaggcctcagaaatccatg
tccggtcagccgggcgagattatcgagaacccgattatttctaacctcaaggaggggctg
acagttcttgaatattttgtttcgacgcatggtgcccgtaaaggtctttccgatacgtcg
ctcaagacggctgatgcagggtacctgacaagaagacttcacgatgtcgctcaggatgtg
atcgtcactattgacgactgcggcaccactcgcggtctgcacgttgagcgcagcatcgag
gaagagaccggcggtcagatcaagttcagcgacaagattcgtggcagggttgcctccagg
gatatctgggataccctcaaggatgaaattgtcgttcctgcaggaggtatcatcactgaa
gatattgctgatgcaatccaggccaacatcggtgtcctcgaggctgatatccgttcggta
ttgacctgtgaggcaaaacagggaatttgctccaaatgttacgggaccaaccttgccgtt
cataaaatcgtcgagatcggcgaagctgtcggtgttatcgccgcgcagtcaatcggtgag
ccaggtactcagctgacgcttcgtaccttccatcagggcggaacggctcaggggggtatt
gctgaaacggagacgaaagcagtctacgaaggccaggttgagtttgaaaatattcgcacc
gtcgagcaggagaccatcaatgaagatggtatgccggaagtacgtatcctggtaatccag
aaaaacggaaggatcaatattgtcgatccggattccggtaaggtgcttaaacgtcacgac
gttcctcacggtgccagtctgcatcgcagcgtaggcgaccttgtcaagaaagaggacgtg
ctcttcagcagcgaacccaacagtacacagattattgcggagctggaaggttacgtgaag
tttgccgatatcgagaaaggcgtcacctacaaagaagaggtcgatcctcagaccggttac
gtccagcatgtcattatcaactggcgatccaagcttcgcgcttctgaaacccgtgaaccg
aggatcatgattgtcagcgaaagcggtgaaatcctcaaaacctatccggtcccgatcaag
tcgaacctctttgtcgaggacaacaagaaggtgagcatcggtgatattctggctaaagtg
ccgaggaacctcgatcgtgtcggtggtgatattaccgccggtctgccgaaggttaccgag
ctcttcgaagcaagaatcccgtccgatccggctattgtttccgagattgatggttatgtc
ggatttgggtcgcagcgtagaagcagcaaggagatcaaggttaaaaacgagttcggtgaa
gagaaaacctattatgtccaggttggtaagcatgtattggccaacgagggcgatgaagtc
acggcaggtgagccattgactgacggtgctatttctccgcaggatattcttcgtattcag
ggccctaacgccgttcagcagtatctggtcaatgaaatccagaaagtctaccagatcaat
gccggtgtcgagatcagtgacaagcatcttgaggtgatcgtgcgtcagatgcttcagaaa
gtcagggtcgaagagccgggcgataccgagcttctacccggggatctgattgacaggaca
gtctttattgaagccaatacggcgattgctgaaaaagtcagagttatcgacaagggcgac
gctccggccagaatccaggaagaccagctctacaagctgaaagagattaccaagctcaat
cgcgaactgcgcaagaacagtaagagcctgatcgttgtcgaaccggctatacaggcgact
tctcatcctgttctgctcggtatcacgagcgcggcgctgcagactgaaagcgtgatttcg
gcggcctctttccaggagacgacgaaggtgctgactgatgctgccgtggctggtaagatc
gacaatcttctcggtcttaaggaaaacgttatcgtcggtaagcttattcctgccggtaca
ggtcttaaagcctatcgtaaacttgaactcaataaggtttacccggaggcagcagaaatc
gctgtgcccgaggtcgatgaagccgcaccggcttcatcggatgatgacgctgctgagtaa
DBGET
integrated database retrieval system
