Prosthecochloris aestuarii: Paes_1176
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Entry
Paes_1176 CDS
T00732
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
paa
Prosthecochloris aestuarii
Pathway
paa02020
Two-component system
paa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Paes_1176
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Paes_1176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paa03021
]
Paes_1176
Transcription machinery [BR:
paa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Paes_1176
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
Osteopontin
Motif
Other DBs
NCBI-ProteinID:
ACF46205
UniProt:
B4S818
LinkDB
All DBs
Position
complement(1284730..1286199)
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AA seq
489 aa
AA seq
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MPDFKLQQSQRAQLSAQQILSSQLLQLPLLNLEQRIYDELQENPLLELIEEKNESVDETG
EQSGDDGDDGDGEGMFDSVDRFEARDEKRPEKNEQPKESQEGVLHFTVDTTPKENFIQAI
QQDSFEERMLRDLSLREEIGSTELLIASEILGNLDDDGYLQDGLDIVADGLLTNHGVDVE
PRDIQRVLHIIQRMDPPGIAVASLRERLLVQLELNQAASGSGGTAIIAKKLLDSYFDDFL
NNRYEKIIKRMQIRPEQLEAAIKEIAALDPHPFVVYQDTGDYIMPDFIVTYENGRLTAAL
NDRSNLSVQVSDAYRDVLKNRKIPRGDKQFVRQKLNRAKEFASAIEQRRHTLLSVIDALM
QFQYEFFVSGPSMLVPLGMKDVAEKSGFDLSTISRAVNGKYVQTRFGTFELKYFFSGGTT
TDEGEELSTKIVKQYLQEMVSAEDSKKPLSDDRLAQMLEEKGIRIARRTVAKYREQMQIP
VARLRKKIF
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgccagactttaagcttcagcaaagccagagggcccagctttctgcacagcagattctt
tcgagtcagcttctgcagcttccccttcttaaccttgagcagcggatatacgatgagctg
caggaaaacccgctgcttgaactgatcgaagagaagaacgaatcggtcgatgaaacaggt
gagcagagcggagacgacggcgatgacggtgatggagaagggatgttcgactctgttgat
cgttttgaagccagggatgaaaagcgccctgaaaagaacgagcagcctaaagagagccag
gaaggggtattgcattttaccgtcgatacgacacccaaagagaattttatccaggcgatt
cagcaggactctttcgaagagcgaatgctcagagatctttctctccgggaggaaatcggt
tcaacagaactgcttattgcatcggaaattctcggtaatcttgatgatgacggttatctt
caggacggtctggatattgttgccgatggcttgttgaccaatcatggcgttgatgttgag
ccgcgtgacattcaacgcgtgctgcatatcatccagcggatggatcccccggggattgcc
gtagcttcgcttcgcgagcgtctgctcgtacaactggaactgaaccaggcagcatcggga
tcaggagggacagccattattgccaaaaagcttcttgacagctattttgatgattttctc
aacaaccgctatgaaaaaatcatcaaaaggatgcagatcaggcctgaacagcttgaagcc
gcgattaaggagattgctgcgctggatccccacccttttgtcgtctatcaggatacgggg
gactatatcatgcctgattttatcgtgacctatgaaaacgggcgtctgaccgcagcgctc
aatgatcgaagtaatctttctgttcaggtttcggacgcctatcgcgacgtcctgaaaaac
aggaaaattccacgaggcgacaagcagtttgttcgtcagaaacttaaccgggcgaaggaa
ttcgcaagtgctatagagcagcgacgtcatactttgttgagcgttatagatgctctgatg
cagtttcagtacgaattttttgtttcaggaccatcgatgctggttcctctgggaatgaag
gatgttgcggaaaaatccggttttgatctttcaacgataagcagagcggtcaacggcaaa
tatgttcagacccgtttcgggacctttgagttgaaatactttttcagtggagggacaacg
acggacgaaggcgaggagctctcaaccaagatcgtcaaacagtaccttcaggagatggta
agtgctgaagactcaaaaaaacctctgagcgatgacagacttgcacagatgctggaggaa
aaaggcatacggatagcccgcagaacggttgcaaaataccgtgaacaaatgcaaattcca
gtagcaaggttaagaaagaaaatattttaa
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