Paenimyroides aestuarii: NPX36_07280
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Entry
NPX36_07280 CDS
T09513
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
paae
Paenimyroides aestuarii
Pathway
paae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
paae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NPX36_07280 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paae03021
]
NPX36_07280 (rpoC)
03400 DNA repair and recombination proteins [BR:
paae03400
]
NPX36_07280 (rpoC)
Enzymes [BR:
paae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NPX36_07280 (rpoC)
Transcription machinery [BR:
paae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NPX36_07280 (rpoC)
DNA repair and recombination proteins [BR:
paae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NPX36_07280 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UUV20169
UniProt:
A0ABY5NNM9
LinkDB
All DBs
Position
1529360..1533661
Genome browser
AA seq
1433 aa
AA seq
DB search
MMNNRNNSKDKNTVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCER
IFGPVKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSL
PNKIGYILGLPSKKLDEIIYYEKYVVIQTGVAKRPDGEELKRLDFLTENEYLDILDTLPM
ENQYLDDSDPNKFIAKMGAECIMDLLQRTDLDTLSYELRHAANNETSKQRKTEALKRLQV
VEAFRESNENRENRPEWMILKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRL
KRLMEIKAPEVILRNEKRMLQEAVDSLFDNTRKATAVKTESQRPLKSLSDSLKGKQGRFR
QNLLGKRVDYSARSVIVVGPELKLYECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKK
IIDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNA
DFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKIRKS
TPDHIVKGEGLTFYSVEEVHIAINEGRLDLNAPVKVRAKDFNAEGELVYQIIETSAGRIL
FNEVVPEAAGYINEVLTKKSLRDIIGKILAVTDVPTTAKFLDDMKDMGYGYAFRGGLSFS
LGDIKIPDQKQGMIDDANNQVEGITMNYNMGLITNNERYNQVIDVWTSTNAMLTELAMKN
IREDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTASGGDIIENPILSNFKE
GLSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIVNSEDCGTLRGIEFEAL
KKNEEIVESLGERVLGRITIDDVINPLTNEVIVPAGEMINEAHVAKINASPLERLEVRSA
LTCEADHGICVKCYGRNLASNRMAQLGEAVGVIAAQSIGEPGTQLTLRTFHVGGTAGNIS
EVSTITTKFKGRLEIEDLKVVKGEDADGKEIDIVISRSTELKLVDLNTGIVLNTHYIPYG
STIYVKDKQVVEEGTVICKWDPYNGVIISEFTGKVAYEDIEQNQTFMVEIDEQTGFQEKV
ITESRNKKLVPTLLIYNKEGELIRSYNLPVGAHLMVNDGEKIKAGKVLVKIPRKSSKTGD
ITGGLPRITELLEARNPSNPAVVAEIDGVVSFGKIKRGNREIIVTPKTGEDDQRKYLVKL
SNQILVQENDFVKAGTSLSDGAITPDDILRIQGPSAVQQYLVNEIQEVYRLQGVKISDKH
FEVVIRQMMRKVQIQDSGDTLFLEEQLIHKDDFIRENDRLFGMKVVEDAGDSSTLKEGQI
ISVRELRDENSILRREDKNLVVARDVIPATATPVLQGITRASLQTKSFISAASFQETTKV
LNEAAVAGKIDNLSGLKENVIVGHRIPAGTGMRKYDAIVVGSKESKQEIDLNF
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatagaaacaacagtaaagataaaaatactgtaaaaaggtttaacaaaatc
tcgatcggattagcatcgccagagtcaattcttgcagaatcaagaggagaggttttaaaa
ccagaaaccattaactatcgtacgcacaaaccagagcgcgatggtttgttctgtgagcgt
atcttcggacctgtgaaagattacgaatgtgcttgtggaaaatataaaagaatccgttac
aaaggtatcgtttgcgaccgttgtggggttgaagtaacagaaaagaaagtgcgtcgcgac
agagtagggcatatcaacttggtggtgcctatcgctcatatttggtatttccgttcgttg
ccaaacaaaattggttacattttaggtttgccatctaaaaagttagacgaaattatctat
tatgaaaaatatgttgtgatccaaacaggtgttgcaaaacgcccagatggtgaagaacta
aaacgtttagatttccttacagagaatgagtatttagatattttggatacccttccaatg
gaaaatcaatatttagatgattcagatccaaataaattcatcgccaaaatgggtgcagaa
tgtatcatggatttattacagcgtaccgatttagacactttgtcttatgaattgcgtcat
gctgcaaacaatgaaacatctaaacaacgtaaaacagaagctttaaaacgtttacaagtt
gttgaagcattccgcgaatcaaacgaaaaccgcgaaaaccgtccggaatggatgattttg
aaagtagttccggtaattccgccagaattgcgtccgttagtgccgttagatggtggtcgt
tttgcaacatcagatttgaacgatttataccgccgtgtaattatccgtaacaatcgttta
aaacgattaatggaaatcaaagcgcctgaagtaatcttgcgtaatgaaaaacgtatgtta
caagaagcggtagattcattgttcgataacacacgtaaagcaacagcagtaaaaacagaa
tctcaacgtccgttaaaatcattatctgattcgttaaaaggaaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgttgattactctgcgcgttcggtaattgtcgttggtcct
gaattaaaactatatgagtgtggtcttccaaaagatatggctgcagaactatacaaacca
ttcgtaattcgtaaattaattgagcgtggaattgtaaaaacggtaaagtctgcgaaaaag
atcatcgataaaaaagagccagtagtttgggatattttagaaaacgtaatcaaaggacac
ccggtattgttaaaccgtgctcctacgcttcaccgtttaggtattcaggcattccagcct
aaattaatcgaaggaaaagcaattcgtttgcacccgttagtatgtacggcattcaacgcc
gatttcgatggggatcaaatggcggtgcatttaccattaggaccagaagctattttagaa
gctcagttgttaatgttggcatcgcacaatatcttaaacccggcgaatggtgcaccaatc
acagtaccttctcaggatatggttttgggtctttattatatgaccaaaatccgcaaatct
actccagatcatattgtgaaaggagaaggtttaacattttattcagtagaagaagtgcat
attgcaattaacgaaggacgtttagatttgaacgcacccgttaaagttcgtgcaaaagat
tttaatgcagaaggagaattggtttaccaaattatcgaaacatcggcaggtcgtatcttg
tttaacgaggtagttccagaagctgcgggttatatcaatgaggtattaaccaaaaaatct
ttaagagatattatcggaaagattttagcagtaacagatgttccaacaactgcaaaattc
ttagacgatatgaaagatatgggttacggatacgcatttagaggtggtttatcattctct
ttaggtgatatcaaaatcccagatcaaaaacaaggaatgattgatgacgctaacaatcaa
gtagaaggaatcaccatgaactataacatgggtcttattaccaataacgagcgttacaat
caggtgattgatgtttggacatctaccaatgccatgttaaccgaattggcaatgaaaaac
attcgcgaagaccaacaaggattcaactcagtatatatgatgcttgattctggagcccgt
ggatcaaaagagcaaattcgtcagttaacaggtatgcgtggattgatggcaaaacctaaa
aaatcgacagcttctggtggagatatcatcgaaaacccgattctttcgaactttaaagaa
ggtttatcaatcttagaatacttcatttcaacccacggtgcgcgtaaaggtttggccgat
accgcattgaaaactgccgatgcaggatacttaacccgtcgtttacacgatgtggcacaa
gatgtaatcgttaattcagaggattgcggcacattgagaggtattgaatttgaagcatta
aagaaaaacgaagaaatagtagaatcattaggcgagcgcgttttaggacgtatcacaatc
gatgatgttatcaatccattaaccaacgaagtaattgttccggcaggtgaaatgattaat
gaagcacacgttgcaaaaatcaatgcatctccattagagcgattagaagttcgttcggca
ttaacctgtgaggcagatcacggaatttgtgtgaaatgttacggtcgtaacttagcatca
aaccgtatggcacaattgggtgaggcagttggtgtaattgcagcacagtcaattggtgag
ccaggaacacagttaacgcttcgtacattccacgtggggggtacggcaggtaacatttcc
gaggtttctaccattacaacaaaattcaaaggtcgtttagaaatagaagacttaaaagtt
gtaaaaggagaagatgccgatggtaaagaaatcgacattgtaatttctcgttcaacagag
ttaaaattagtagatttaaatacaggtattgttttaaacacacattacattccttatgga
tcaaccatttatgtgaaagacaaacaagtggtggaagaaggaaccgtaatttgtaaatgg
gacccgtataacggagttattatttctgaatttacaggtaaggttgcctatgaagacatt
gaacaaaaccaaacatttatggtggagatcgatgagcaaacaggtttccaagaaaaagta
attacagaatcaagaaacaaaaaattagttcctactttattgatttataataaagaaggg
gaattgatccgttcgtacaacttaccggttggggcacacttaatggtaaacgatggagag
aaaattaaagcaggtaaagttttagttaaaatccctcgtaagtcatcaaaaacaggtgat
atcaccggaggtttacctcgtattaccgagttgttagaagcacgtaatccatcaaacccg
gcagtagttgcagagatagacggtgtggtttctttcgggaaaatcaaacgtggtaaccgc
gaaatcattgtgacaccaaaaactggtgaagatgatcaacgcaagtatttagtgaaatta
tcaaaccaaattttggttcaagaaaacgatttcgttaaagcaggaacctctttatcagat
ggtgccattacgccagatgatattttaagaatacaaggaccatctgcagtacagcaatat
ttagtaaacgaaattcaagaagtatatcgtttacaaggggtgaaaatttcagataaacac
tttgaagtagtaatccgccaaatgatgcgtaaagtacaaatccaagattcaggtgatacc
ttattcttagaagagcaattaattcacaaagacgatttcatccgtgaaaacgatcgttta
ttcggaatgaaagttgtagaagatgccggagattcatccacattaaaagaaggacagatt
atttctgtgcgcgaattaagagatgaaaattccatcttgcgtcgtgaagacaaaaactta
gtagtagcccgcgatgtaattccagcaaccgcaactccagtattgcaaggtatcacaaga
gcgtcgttacaaaccaagtcattcatttcagcggcatcgttccaagaaacaaccaaagtg
ttgaacgaagcagcagtagcaggaaaaattgacaatttatcaggcttaaaagaaaatgta
attgttggtcatagaattcctgcaggaacaggtatgcgtaaatacgatgccattgttgta
ggttcaaaagagtcaaaacaagaaatagacttgaatttttaa
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integrated database retrieval system
