Paenimyroides aestuarii: NPX36_12240
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Entry
NPX36_12240 CDS
T09513
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
paae
Paenimyroides aestuarii
Brite
KEGG Orthology (KO) [BR:
paae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paae03016
]
NPX36_12240
Enzymes [BR:
paae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NPX36_12240
Transfer RNA biogenesis [BR:
paae03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NPX36_12240
Prokaryotic type
tRNA splicing ligases
NPX36_12240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UUV21079
UniProt:
A0ABY5NRG4
LinkDB
All DBs
Position
complement(2521731..2523152)
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AA seq
473 aa
AA seq
DB search
MKKITGKDLLRIGFEENIILGKTLHFLENYQGALNKGEVLNILKKLIDNPHETFETSEFY
PLAQQIIALQNEIDSATIPLATEPKEYTVFGNEHIEEGAKKQMEVAMKLPVSVAGALMPD
AHQGYGLPIGGVLATRNAIIPYGVGVDIGCRMALSIYDMEASFFEENQSKFKRELIAQSN
FGAGNGFKGQYRLDHEVLENQLFHENPFLKSLKDKAWAQLGSSGGGNHFVEFGIIEFSER
DEMLNIEKGQYVALLTHSGSRGFGATIASHYTQLAKKVCKLPREAKNLAYFDLNSTEGQE
YWLAMNLAGDYASACHEVIHLKMQKALGAKVLAKVENHHNFAWKEQWNGEEVIVHRKGVT
PASKDVMGIIPGSMTAPGFLVRGKGAPEAIQSASHGAGRQMSRTQAKKEITKTDFKAILK
DHNVTLIGAGLDEAPMAYKDIHQVMQAQEHLIDVVATFTPKMVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaataacaggaaaagacctattgcgtataggttttgaagaaaatatcatttta
ggaaaaacattacactttttagagaattatcagggtgcattaaacaaaggcgaggtatta
aatattttaaaaaaacttattgataacccacatgaaacctttgaaacatcagaattttat
ccattggcacagcagattattgcattgcaaaacgaaatagacagtgctactattccacta
gcgactgaaccaaaagaatataccgtttttggaaacgaacatatcgaggaaggtgcaaaa
aaacaaatggaagttgcgatgaaactgcctgtttcggtagccggagctttaatgcccgat
gcacatcaaggctatggattgccaattggcggtgttttggctacccgaaatgccattatt
ccgtatggagtaggtgtggatattgggtgcagaatggcactttcaatttacgatatggaa
gcctctttttttgaagaaaaccaatcgaaatttaaacgcgaattaatcgcacaatcaaat
tttggtgcaggaaatggttttaaaggacaataccgattggatcacgaagttttagaaaat
caattgttccacgaaaatccgtttttaaaaagtttaaaagataaagcttgggcacaatta
ggaagctctggtggtggcaatcattttgtggaatttggtattattgaattttcagagcgc
gacgaaatgctcaatattgaaaaaggccaatatgttgccctattaacccattcaggttca
cgaggttttggcgctactattgccagtcattatacccaattggcaaagaaagtttgcaaa
ttgccacgcgaagctaaaaacctagcctattttgatttgaattcaaccgaaggtcaagaa
tattggctggcaatgaatttggctggcgattacgcttcggcttgccatgaagtgattcat
ttaaaaatgcaaaaagctttaggagctaaagttttagctaaagttgaaaatcatcacaat
tttgcgtggaaagagcagtggaacggcgaagaagtgattgttcaccgaaaaggagtcaca
cctgccagcaaggatgtaatggggataattccgggatcaatgacagcacctggtttttta
gttcgtggaaaaggtgcaccagaagccattcagtctgcatcgcacggtgccggacgacaa
atgagccgaacccaagcgaaaaaagaaattactaaaaccgatttcaaagccattttaaaa
gaccataacgttactttaattggtgcgggtttagatgaagctccaatggcttataaagat
attcatcaggtgatgcaagcccaagaacatttaattgatgtggtggctacttttacaccc
aaaatggttcgtatggcagacgatggaagtagggaggattag
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