Paenimyroides aestuarii: NPX36_14175
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Entry
NPX36_14175 CDS
T09513
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
paae
Paenimyroides aestuarii
Pathway
paae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NPX36_14175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paae03019
]
NPX36_14175
03400 DNA repair and recombination proteins [BR:
paae03400
]
NPX36_14175
Enzymes [BR:
paae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NPX36_14175
Messenger RNA biogenesis [BR:
paae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NPX36_14175
DNA repair and recombination proteins [BR:
paae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NPX36_14175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Motif
Other DBs
NCBI-ProteinID:
UUV21449
LinkDB
All DBs
Position
complement(2926666..2928861)
Genome browser
AA seq
731 aa
AA seq
DB search
MKSIEIDLHKELKKYFGFSQFKGLQEQVVNSIIYGNNTFVIMPTGGGKSLCYQLPALVLE
GTAIVVSPLIALMKNQVDAIRGLSNEIGVAHVLNSSLTKTEITQVKDDIKKGVTKLLYVA
PESLTKEEYVSFLNSVPLSFIAIDEAHCISEWGHDFRPEYRNLRNIIRKLGDIPIIGLTA
TATPKVQEDILKNLEIPNANVFKASFNRPNLYYEVRPKTKNIESDIIKFINQFKGKSGVI
YCLSRKKVEEITQVLQVNGITAVPYHAGLDAKTRAKHQDMFLMEDVNVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGYCLAYYAYKDIEKLEKFMTGKPLAEQE
IGFALLQEVVAYAETSVSRRKFLLHYFGEEFDEVNGEGADMDDNSRNPKTKKEAQDQVVL
LLKTIKDTKQIYKSKEIVLTLLGKINSIIKSYKTDTQSIFGAGKDYTDKYWMALIRQVLV
AGFISKDIESYGVIKMTPQGEDFLKNPSSFMMTEDHNYEETADDSIIVNNKSSNVADEVL
VGMLKDLRKKVAKKMGVPPFVVFQDPSLDDMALKYPIRMDELANVHGVSEGKAKKYGKEF
LELINRYVEENDVIRPDDLVVKSTGANSALKLFIIQSVDRKLSLEDIAAAKSLDMDLLLK
EMEQIVYSGTKLNINYWIDDILDDDQQDEIKEYFMEAENDSIKAALKEFDGDYDIEELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaatcgaaattgacttacataaagaattaaaaaaatattttggattcagtcag
ttcaaaggattgcaagaacaagttgtaaatagcattatttatggcaataatacttttgta
atcatgccaactggcggcggaaaatctttatgttaccaattacctgcgttagtgttagaa
ggaactgcaattgtggtgtcgccccttattgctttaatgaaaaaccaagtcgatgccatt
cgcggcttatcaaacgaaatcggcgtggctcacgttttaaattcttcgttaacaaaaaca
gaaatcacacaggttaaagacgatattaaaaaaggtgttaccaaacttttatatgttgct
ccagaatcgcttacaaaagaagaatatgtttcttttttaaactcggttccgctgtctttt
atcgccatagatgaagcacactgtatttcggaatgggggcatgatttcagacctgaatat
cgaaatttacgcaatatcatccgcaaattgggcgatattccgattattgggttaactgca
actgccacaccaaaagtgcaagaagatattcttaaaaaccttgaaattcccaatgcaaat
gtgtttaaggcatcgttcaacagacccaatttgtattatgaagtacgaccaaaaacaaaa
aatatcgaatcagatatcattaaatttatcaatcaatttaaaggtaaatcgggcgttatt
tattgtttaagtagaaaaaaagtagaagaaattactcaagttttacaagtaaatggtata
acggctgttccgtatcatgcaggattagatgccaaaacccgcgccaaacatcaagacatg
tttttaatggaagatgtaaatgtggtggtagcaacgatagcgtttggaatgggaatcgac
aagcccgatgtgcgttttgtaattcatcatgatatacccaaatcgcttgaaagttattat
caagaaacaggacgtgccggccgtgatggaggcgaaggttattgcttggcctattatgct
tataaagatattgagaagctagaaaaatttatgacaggaaagccattggctgaacaagaa
attggttttgctttgttgcaagaagtggttgcttatgccgaaacatctgtttcgcgccgt
aaatttttactacattattttggtgaagaatttgatgaagtaaatggggaaggagccgat
atggatgataattcgcgcaaccctaaaaccaaaaaagaagcccaagaccaagtggtactt
cttttaaaaaccataaaagataccaagcaaatctataaatcaaaagaaattgtattaacc
ttattaggaaaaataaactcgattataaaatcctataaaaccgatacccaaagcatattt
ggcgcaggaaaagactatacagataaatattggatggccttgatacgccaagtattagtc
gcaggttttatttcaaaagatattgaaagctatggtgttattaaaatgacgccacaagga
gaagatttcttaaaaaatccgtcgtcttttatgatgacagaagatcataattacgaagaa
acagcagatgatagcattattgtaaataataaatcatcaaatgtagccgatgaagtattg
gttggtatgctgaaagacctccgtaaaaaagtggcaaaaaaaatgggcgttccgccgttt
gtcgtctttcaagacccctcattagatgatatggcgttaaaatatccaattaggatggat
gaattagccaatgtgcatggtgtgagcgaaggaaaagctaaaaaatacggtaaggaattc
ttagagctaatcaatagatatgtagaagaaaacgatgtaattcgtcctgatgacttggtg
gtaaaatctacaggtgccaattctgctttgaaattatttattattcaaagtgtggatcga
aaattatcgttggaagatattgccgctgcaaaaagtctagatatggatttgcttttgaaa
gaaatggagcaaattgtatattcaggcacgaaactgaacatcaactattggattgatgat
attttggacgacgaccagcaagatgaaatcaaagaatattttatggaagctgaaaacgac
tctattaaagcggctttaaaggaattcgacggtgattatgatattgaagaattgcgttta
atgcgtataaaatttattagtgaagtagccaattaa
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