Paracoccus sp. AK26: FIU66_07540
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Entry
FIU66_07540 CDS
T08451
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
paak
Paracoccus sp. AK26
Pathway
paak02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
paak00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FIU66_07540 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paak03021
]
FIU66_07540 (rpoD)
Transcription machinery [BR:
paak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FIU66_07540 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF8810
DUF1451
Lmo0850
FTCD_C
CFAP99_CC
BLOC1S3
Motif
Other DBs
NCBI-ProteinID:
QIR85073
LinkDB
All DBs
Position
complement(1523083..1525056)
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AA seq
657 aa
AA seq
DB search
MAAKDDDHDKTDKDDNAHSLDMSQAAVKRMIADARERGYITYDQLNAVLPPEQVSSEQIE
DVMSMLSEMGINVIEDEDGAEEPEGGAVAVVGSSSREVAVASSDTEKLDRTDDPVRMYLR
EMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFKAITMWREELLDEEILLRDVID
LETTFGQSLEDEEGDEEDLTEDSAPTESSQKREELDADGNPMRGEEDEDEDEGANLSLAA
MEASLKPKVLETLELIARDYESLAAMQDQRMSATLNEDNSFSATAESDYQVLRSRIVGLV
NELHLNSSRIEALVDQLYGINRRIVTIDSGMVKLADAARINRREFIDAYRGTELDPAWVD
RMSQQAGRGWQALFERSRDKVEELRNEMAQVGQYVGVDIEEFRRIVSQVQRGEKEARQAK
KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR
QAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRK
VMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREE
RVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaggacgacgatcacgacaagacggacaaggacgacaacgcccattcgctg
gacatgagccaggctgcggtcaagcgcatgatcgcggatgcccgtgaacggggctacatc
acctatgatcaactgaatgccgtcctgccgcccgagcaggtcagcagcgaacagatcgag
gacgtgatgtcgatgctgtccgaaatgggcatcaacgtgatcgaagacgaggacggggcc
gaggaaccggaaggcggcgcggtcgccgtggtcgggtcgtcttcgcgcgaagtcgcggtc
gccagctcggacaccgagaaattggaccgcaccgacgaccccgtccgcatgtatctgcga
gagatgggcagcgtcgagttgctgtcgcgcgagggcgagatcgccatcgccaagcggatc
gaggccggccggaacaccatgatcgcgggcctttgcgaaagcccgctgaccttcaaggcc
atcaccatgtggcgcgaggagcttctggacgaagaaatcctgctgcgcgacgtgatcgac
ctggaaaccaccttcggccagagcctggaggatgaagagggtgacgaggaagacctgacc
gaggacagcgcccccaccgaatcttctcagaagcgcgaggaattggacgccgatggcaat
cccatgcgcggcgaggaggacgaggacgaggacgagggcgccaacctgtcgctggccgcg
atggaagccagcctcaagcccaaggtgctggaaaccttggaactgatcgcgcgggactac
gaatcccttgcggcgatgcaggaccagcggatgtcggccaccctgaacgaggacaacagc
ttctcggccacggcggaaagcgactaccaggtgctgcggtcgcgcatcgtcgggctggtg
aacgagctgcacctgaacagcagccggatcgaggccctggtcgaccagctttacggcatc
aaccgccggatcgtcaccattgacagcggcatggtcaagctggccgatgcggcgcggatc
aaccgccgcgaattcatcgacgcctatcgcggaaccgaactggatccggcctgggtggac
cgcatgtcccagcaggcaggccgcggctggcaggcgctgttcgaacgttcgcgcgacaag
gtcgaggagttgcgcaacgagatggcgcaggtcggccaatatgtcggcgtcgatatcgag
gaattccgccgcatcgtgtcccaggtgcagcggggcgaaaaggaagcacgccaagccaag
aaggaaatggtcgaggcgaacctgcggctggtcatcagcatcgccaagaaatacacgaac
cgcggcttgcagttcctggacctgatccaggaaggcaacatcggcctgatgaaggccgtc
gacaagttcgaataccgccgcggttacaagttctcgacctatgcgacctggtggatccgg
caggccatcacccggtccatcgcggaccaggcacggacgatccgcatcccggtccacatg
atcgagacgatcaacaagctggtccgcaccggccgccagatgctgcacgagatcggtcgg
gaacccacgcccgaggaactggccgaaaagctgcagatgccgctggagaaggtccgcaag
gtgatgaagatcgccaaggagccgatctccctcgaaacccctatcggggacgaggaggac
agccagcttggcgatttcatcgaggacaagaacgcggtcctgccgctggacagcgcgatc
caggaaaacctcaaggaaaccacgacgcgggttctggcgtcgctgaccccgcgcgaggaa
cgggttttgcggatgcgctttggcatcggcatgaacaccgaccacacgctggaggaagtt
ggccagcagttcagcgtcacccgcgaacggatccgccagatcgaggccaaggcgctgcgc
aagctgaagcacccctcgcggtcgcgcaagctgcggtccttcctggaccagtga
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