Pyrococcus abyssi: PAB0034
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Entry
PAB0034 CDS
T00024
Symbol
recJ-like
Name
(GenBank) recJ-like single-stranded exonuclease recJ homolog
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pab
Pyrococcus abyssi
Pathway
pab03410
Base excision repair
pab03430
Mismatch repair
pab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PAB0034 (recJ-like)
03430 Mismatch repair
PAB0034 (recJ-like)
03440 Homologous recombination
PAB0034 (recJ-like)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pab03400
]
PAB0034 (recJ-like)
DNA repair and recombination proteins [BR:
pab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PAB0034 (recJ-like)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PAB0034 (recJ-like)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PAB0034 (recJ-like)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Acid_phosphat_B
Motif
Other DBs
NCBI-ProteinID:
CAB48990
UniProt:
Q9V2K8
LinkDB
All DBs
Position
59921..61366
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AA seq
481 aa
AA seq
DB search
MVFLMDKKGFLEKVKEAVDLARFHIELGHTIRIISHRDADGITSAAIVAKALAREGADFH
VSIVKQVSEDLVRQLKDEDYKVFIFSDLGSGSLSIIKEHLKDRTVIILDHHPPENVELPE
KHILVNPVQFGANSVRDLSGSGVCYFFARELNERNKDLAYIAIVGAVGDMQENDGVFHGM
NLDIIEDGKSLGILEVKKELRLFGRETRPLYQMLAYATNPEIPEITGDERKAIEWLRNNN
FNPDKRYWELSEEEKRRLHNLLVIHMIKHGAGKEEIDRLIGDVVISPLYPQGDPRHEARE
FATLLNATGRLNLGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEG
EHVYVLYVGKNIRDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKAL
EKGYHLGEALKKAAEMIGGEGGGHAIAAGIRVPKARLAEFRKLIDKILGEQVKGSENQSE
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
ttggtgttcttgatggacaagaagggattcttagagaaggtcaaagaggctgtggattta
gctagattccatatcgagttaggccacactataaggataatttcccatagggatgccgac
ggcattacatcagccgccatagtcgccaaggcactcgctagggaaggtgcagatttccac
gttagcatagtcaagcaagtgagcgaagacctagtcagacagctaaaggacgaagattat
aaggttttcatattctcggacctcggtagtggatccctaagtataataaaagagcactta
aaggatagaaccgtcataatccttgatcaccatcccccagagaacgttgaacttccagag
aagcatatcctagttaatccagttcaatttggagccaacagcgtgagggatcttagcggt
tctggagtctgctacttctttgcaagggaattgaacgaacgaaacaaggatttggcttac
attgcaatagttggggcagttggggatatgcaggaaaacgatggcgtcttccacgggatg
aaccttgacattatagaggatgggaaatccctgggcatactagaggttaagaaagagctc
aggctatttgggagggagacaaggccactatatcagatgcttgcctacgcaacgaaccct
gaaatcccggagataacaggggatgaaaggaaagctattgagtggctaaggaacaacaac
ttcaacccagacaaaaggtactgggaacttagtgaggaggaaaagaggagacttcacaac
ctgttagtaatccatatgataaagcacggggccggcaaggaggagatagacaggttaata
ggggacgtagtcataagccctctctatccccaaggagacccgagacatgaagctagggag
ttcgcaacgttacttaacgcgacaggtaggcttaatctaggaaacttgggagtggccgtt
tgcttaggggacgaagaggcctttaagagggctatgaagatggtcgaggaatacaagagg
gagcaaattgaggcaagaaagtggttgatacaaaactggaacagtgaagtttgggaagga
gagcacgtttatgtcctctacgttgggaagaacattagagataccctggttggcatcgcg
gcaagcatggccataaacgctggccttgcaaatccagaaaagcccgtcatagttttcgca
gacacggacgaggatccaaacctaatcaagggttccgctagaacgacagagaaagcatta
gagaagggctaccatcttggggaggccctcaagaaggcggcagaaatgataggcggcgaa
ggcggaggacacgcaatagcggctggaataagggttccaaaggcgagacttgcagaattc
aggaagttgatagataaaatcctcggtgagcaggtgaagggaagtgaaaatcagagcgaa
agttga
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