Pyrococcus abyssi: PAB0396
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Entry
PAB0396 CDS
T00024
Name
(GenBank) prf1 peptide chain release factor subunit 1 (translation termination factor ARF1)
KO
K03265
peptide chain release factor subunit 1
Organism
pab
Pyrococcus abyssi
Pathway
pab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PAB0396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pab03019
]
PAB0396
03012 Translation factors [BR:
pab03012
]
PAB0396
Messenger RNA biogenesis [BR:
pab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PAB0396
Translation factors [BR:
pab03012
]
Eukaryotic type
Release factors
PAB0396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
baeRF_family10
acVLRF1
HypA
Zn_ribbon_3
TssR_VWA
TetR_C_26
DUF5318
Zn_ribbon_8
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
CAB49500
UniProt:
Q9V151
LinkDB
All DBs
Position
548383..549636
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AA seq
417 aa
AA seq
DB search
MSKMTRHDAQLYELKKKIEELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIK
SKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVR
LYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVLDELTSNVPGKTRAG
GQSARRYERIREQETHEFMKRIGEHANRVFLPLLEKGELKGIIVGGPGPTKEDFVEGDYL
HHELKKKIIGVVDISYHGEYGLRELVEKASDILRDHEVIREKKLVNEFLKHVVKDTGLAT
YGEREVRRALEIGAVDTLLISEGYDKVRVRAKCNHCGWEELKTMSEEEFEVYKKKLTRCP
KCGSQNLTIEKWDVAEELIKMAEEAGSDVEIISLDTEEGQQFYRAFGGLGAILRFKI
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaatgacgcgccatgacgctcaactttatgaattaaagaagaaaattgaggag
cttaagaagattcgagggcgaggcacggagttaatctcactttacattccagctggttac
gatctgagcaaagttatgcaacagctcagggaagaatacagtacagcccagaatataaag
tccaagaccacgagaaagaacgtccttggagctttagagagggccatgcaacacttaaaa
ctgtacaagcaaacccccgaaaatggattggccctcttcgttgggaacgtcagcgagatg
gaagggaacactgacataaggctctgggctatagttcctccagagccattaaacgttaga
ctttatcgatgtgatcagacatttgtaactgaaccgctcgaggagatgcttagggttaag
gatgcttatggtttaattaccgtagagaagaacgaagcgacgataggcttgcttaggggt
aagagaatagaggttcttgatgagctaacatctaacgtcccagggaagactagggctgga
ggtcagtccgctcgaagatacgagaggattagggagcaggaaacccacgaattcatgaag
agaattggagaacacgccaacagggtgttccttcctttattggagaaaggagaacttaaa
gggataatagttggtggtcctggaccaacaaaggaggacttcgttgagggagattacctg
caccacgagctcaagaagaagataattggagtcgttgatataagctatcacggtgagtat
gggcttagggaactcgttgagaaggcaagtgatattcttagggatcacgaggttataagg
gagaagaagctagtgaatgagtttctgaagcacgtggttaaagatactggattggctacg
tacggtgagagggaagttaggagggcccttgagattggtgctgtcgatacgcttttgata
agcgaaggctacgacaaggttagggttagggcaaagtgcaaccactgtggctgggaagag
ctcaagaccatgagcgaggaggaatttgaagtttacaagaagaagctcacaagatgtcct
aagtgcggaagtcaaaacttgacaatagagaagtgggatgttgccgaggaattaataaaa
atggcagaggaagcaggttcagacgttgaaataatctcgcttgacaccgaagagggacag
cagttctacagggccttcgggggacttggggctatcttgaggttcaagatttaa
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