Pyrococcus abyssi: PAB0420
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Entry
PAB0420 CDS
T00024
Symbol
rph
Name
(GenBank) rph ribonuclease PH, exosome complex exonuclease
KO
K11600
exosome complex component RRP41
Organism
pab
Pyrococcus abyssi
Pathway
pab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAB0420 (rph)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pab03019
]
PAB0420 (rph)
Messenger RNA biogenesis [BR:
pab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PAB0420 (rph)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PAB0420 (rph)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Pinin_SDK_N
Motif
Other DBs
NCBI-ProteinID:
CAB49532
UniProt:
Q9V119
Structure
PDB
PDBj
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Position
576482..577231
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AA seq
249 aa
AA seq
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MMEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPR
ELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPR
TAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEED
NYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK
IAQEVEGSE
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaagccagaggggcttaagcttattgatgagaatggtaggaggatcgatggt
aggaagaagtatgagcttaggccaatcaagatggaagttggcgttcttaagaatgctaat
ggttcggcttacattgagtggggtaagaataagataatagccgcagtttatggccctaga
gagttacaccctaagcacttgcagaggcccgatagggcgattttgagggttaggtataac
atggcgcctttcagcgttgaagagaggaagaagcccggcccagacaggaggagcatcgag
ataagcaaagtcattaagggggcccttgagcccgctttaatactggagatgtttcccagg
accgcaatagatgtcttcatagaggttctccaagccgatgctggaacgagggttgctgga
atcaccgcagcctccttggctttggccgatgctggaattccaatgagagatctagttgca
gcgtgtgccgctggtaaaatagagggagagatagtcctagaccttaacaaagaggaggac
aactacggtgaagccgacgttccggtggctataatgccgctaaagaatgacataactctc
ctccagatggatggttatctaacaaaggatgagttcattgaggcagtaaagcttgcaata
aagggcgctaaagcggtttatcagaagcagagggaagccctgaaggagaagtaccttaag
atagctcaggaggttgagggaagtgagtga
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