Pyrococcus abyssi: PAB0423
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Entry
PAB0423 CDS
T00024
Symbol
rpoB
Name
(GenBank) rpoB DNA-directed RNA polymerase, subunit B (EC 2.7.7.6)
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
pab
Pyrococcus abyssi
Pathway
pab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAB0423 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pab03021
]
PAB0423 (rpoB)
Enzymes [BR:
pab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAB0423 (rpoB)
Transcription machinery [BR:
pab03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
PAB0423 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Zf_2nd_IFT121
DUF5817
Auto_anti-p27
Zn_ribbon_NOB1
RUBY_RBDX
DUF8617
RNA_pol_Rpb2_45
UBA_NBR1_C
Zn_ribbon_SprT
Motif
Other DBs
NCBI-ProteinID:
CAB49536
UniProt:
Q9V115
LinkDB
All DBs
Position
579538..582891
Genome browser
AA seq
1117 aa
AA seq
DB search
MRGPTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDF
EVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRI
GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK
DERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDI
VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL
PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF
SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV
SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL
ALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIK
KDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK
WSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAA
PRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFV
VAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGY
RGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPS
ERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTES
GIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF
KHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR
EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVC
GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagaggtccgaccgttgtagaggttactcccgacgatctttggattgttatggagagc
tactggcaagaaaagggtctcgtaagacagcacttggattcttacaatgccttcattgat
aggggccttcaagaggtcgttgatgaattcggaggaataaagccggatattcctgatttt
gaagttaagtttgggaaaataagggttggagaaccagaattccaggagcctcatggtcaa
aggaagccactgtacccaatggatgcaaggattaggaacctaacttactccgcacctctc
tacctggaaatgatacccgtgattaggggaatagaacaggaacccgttgaggtgagaata
ggggagctcccaataatgctcaagtcgaaagtttgcagactctatggacttagcgatgac
gagttaaggcaactcggtgaggatccaaaggatcctggaggttactttataattaatggt
tctgagagagtaatagtttctatagaggatatagcccctaatagaaccctagtagaaaaa
gatgagaggcaggagaagtacatcgccaaggtcttctcttataggcatggttatagggct
ctcgttacagttgagagaaagaaggatggaattctatacgttggtatacccaacgttcca
aagccggtaaagttcgtttatgtgatgagagctttaggtctggagagggataaggacata
gtggatgccgttggtaatgatcctgaggttcagcagattctattcgacaaccttgaggat
gcaagtgatatcactacccagcaggaggccctagagtacataggaaagctagtggctcct
ggccaagctagggagtacaggttgaagagggcggaatacgttatagacaacaatctcctc
ccacacataggtgtttcccctgaggataggataaggaaggcctactaccttggaatgatg
gcattaaaggtcatagagctatccctgggtaagagagatgaagacgataaagatcactac
gctaacaagaggctgaggcttgcgggggatctgctaaaggaccttttcagggtagcgttt
agtcagcttgtaaaggacatacagtaccagatgacaaagacctaccagaggaggggtgag
aagtacgtatttgggaacatccacaggttcataaggaactcgataagacccgacgttctt
accgagaggattgagcatgctctagcaactggagcatggccgggtggaagaactggtgtg
agccagttgctcgatagaactaattacgtctcaacgctctcccacctgagaagggttaca
tctcctcttgacagagagcaaccccacttcgaggcaagagacttgcacggaactcactgg
ggaaggatatgtccaactgaaacccctgaaggtcctaactgtggtctagttaagaactta
gcattaatggcccagataaccaccgcagttcccgaggaagaggtaaaggaatacctaatg
tccctgggcatagttccaattgaggttagaaggccgagtccagagctctggagagtgtac
ctcaatggagttataataggaaccattgaggatggcaaggcccttgttgagaggattaag
aaggacaggaggagcggaaagataagcgacataataaacgtcgcctattacgaggacgtt
agggaggtttacgttaatagcgatgatggtagagttaggaggccactaataatagtcgag
aacggtaagccaaagctaactaaggagcacgttcaggcaattaaagagggaagactcaag
tggagcgacctcgttaggatgggcgtaatcgagtacctcgatgctgaagaggaggagaac
gcgtacgttgcgatgtggccctgggaggtcaccgaggaacacactcatctcgagcttatg
cccgcagcaattctaggattgccggcttcactaattccatacccagagcacaacgccgcc
ccgagaaatacatatggagccggtatggccaagcagagtttgggtcttggatgggctaac
ttcaggattagggtcgacacgaggggtcacttgttacactatccacagattccactcgtt
aactctagaataatgaaggccgttggttacgaggacaggcctgcgggtcagaacttcgtc
gtcgctgtcttggcttatcacggctataacatggaggatgctattataatcaataaggca
tctatagagagaggattagctagatcaacgttcttcagaacgtacgaggctgaggagaag
aagtacctaggaggtcaaaccgataagttcgagattccatcacctaccgttaggggatac
aggggagagaagtactacaggcacctcgatgaagatggtttgatattcccagagtcaaag
gttgaaggaaaggacgttctgataggcagaacatcaccgccaaggttccttgaggagaga
gggttaggagctgttagtttacaagagagaagggaaacgagtgttgccgttaggcccagt
gagaggggtgtagtcgataaggtgataataactgaaactggagatggaactaagctggtc
aaggtcacggttagagacttaaggatcccagagattggagataaattcgcttcaaggcac
ggtcagaagggtgtcataggattgatagtgccccaagaagacatgccttggaccgagagc
ggaatagttcccgacctaatagttaacccacacggtatcccatcgagaatgaccgttgga
cagttacttgaggctattggaggtaaggtagccgctttaaagggaaggagggttgatggt
acagcgttcataggggagcccgaggagaagctcaggaaagagttagaagagcttggcttc
aagcacaccggaagggagataatgtacgatggaattactggaaagaggttcgaagctgac
atattcgtcggagtaatctactaccagaggctgcaccacatggttgccgataagatacat
gcaagaagcaggggtccagttcaggttctcaccaagcaaccaaccgagggtagagctagg
gaaggaggtctcagattcggagagatggagagagatgtcctcgttggtcatggtgctgca
atgctactaatcgagcgtcttctggaggagagtgataagactgaagtctgggtctgtgag
aactgtggtcacatagccttggaggacaagagaagacataaggtctattgtccagtctgt
ggagaggaggagaggattagtaaagttgagatgagttatgcgtttaagctactcttggat
gagcttaaggccatggttattaggccaaagttaaacctcacggagagggtgtga
DBGET
integrated database retrieval system
