Pyrococcus abyssi: PAB0950
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Entry
PAB0950 CDS
T00024
Name
(GenBank) Probable archaeal transcription factor, related to transcription factor TFIIE, alpha subunit
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
pab
Pyrococcus abyssi
Pathway
pab03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PAB0950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pab03021
]
PAB0950
Transcription machinery [BR:
pab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
PAB0950
Prokaryotic type
Archaeal type
TFE
PAB0950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
HTH_9
HTH_5
Rad50_zn_hook
HTH_24
DUF7342
HTH_Crp_2
Sigma70_r3
POLR3C_WHD
TrmB
HTH_DeoR
HTH_20
HTH_AsnC-type
Phage_rep_org_N
HTH_IclR
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
CAB50336
UniProt:
Q9UYS6
LinkDB
All DBs
Position
1386592..1387164
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AA seq
190 aa
AA seq
DB search
MSRKNKALLEIAKDIGGDEAVEIVKALEKKGEATDEELAEITGIRVNTVRKILYALYDEK
LADFKRIKDEETGWYYYYWHLETKRLPEIIRARKLRELERLKKMLQEETSEVYYHCGNPE
HPKLTFDEAFEYGFTCPICGEILQEYDNSAVIEELKKRIEELEIELGLRPSPKKEKKKTR
AKAKRKTRKK
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggaaaaacaaggccttgcttgagatagccaaggacattggtggagatgaggcc
gtagagatagtcaaagccctagaaaagaaaggagaagcaacggacgaagagttagctgag
ataactggaataagggtaaacacggttagaaaaattctgtacgctttatacgatgaaaag
ttggcagattttaagagaataaaggatgaagaaacaggatggtattactattactggcat
ttagaaacgaagagactacctgaaataataagggcccgaaagcttagggaattagagagg
ctaaagaagatgctccaagaggaaactagtgaggtttactatcactgtggcaaccctgag
catccaaagttaacgtttgatgaagcgtttgaatacgggttcacttgcccaatctgcggt
gaaatacttcaagaatacgacaactcagctgtaatcgaggaactcaagaagaggattgag
gaacttgagatagagcttggactaagaccctcgcctaaaaaggaaaagaagaagacgaga
gctaaagctaaaaggaaaactagaaaaaagtga
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