Pyrococcus abyssi: PAB1035
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Entry
PAB1035 CDS
T00024
Name
(GenBank) Predicted hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pab
Pyrococcus abyssi
Pathway
pab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAB1035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pab03019
]
PAB1035
Messenger RNA biogenesis [BR:
pab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PAB1035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Lactamase_B_3
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CAB50472
UniProt:
Q9UYE0
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All DBs
Position
1525638..1527188
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AA seq
516 aa
AA seq
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MKITVYDGANTIGGTKIHIEDGNNGIFLDFGMNFAKYSMYYEEFLRERTKRGIYDLWMLN
LIPRLNIYRSDLIPNDLAQEVSRYPRIPVNAVLISHAHLDHVGNVALLDEKIPIVASPTT
LVILKALRDTSRGNNLGMETPYYTPRKRTEGNPPLVEANTGKYYPTRDLILTDKFSEEVR
RFMRWRAEVELANKNNIKRIKLGKVQNLEESYLGFEVRAYPVDHSIYGATAYIIEGDVSV
AYTGDFRLHGKNGNLTRKFIKAAKNASILITEGTRVSRKNDDFNVSEKEVYENALRIVEE
AKGLVIADFSLRNFERLESFKRIAEKTGRELVITTKEAYYLHALKTAGEADHLREVKIYE
DSKTKPEKWEKWILSKYNELKVTPEEITREQENYILCFSFYDMPKLLDIMPSGGVYIYSS
SEAFTEEQVFSFLRLWNWLQYFGFEVHGFKVDEHGRPIFEKGFHASGHISKDELVKVIEE
VDPDYIVPVHTENPEWFREVWEDKAIILRNGDSWEI
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaagataaccgtttatgatggggcaaacactattggcggaacaaagatccacattgaa
gatggtaacaatgggatttttcttgactttggaatgaacttcgcaaaatactctatgtac
tacgaagaattcctaagggaaagaaccaaaagaggtatatacgacctgtggatgcttaac
ctaatcccgaggttgaacatctaccgtagtgacttaattccaaacgacttagcccaggaa
gtctctcgctacccaagaatccccgttaatgctgtcctaataagccacgcccaccttgac
cacgttggcaacgttgccctcttagacgagaaaattccaattgtagcctctccaactact
ctcgtaatactgaaagccctcagagacacgtctagaggtaataatctcggtatggaaaca
ccgtactacactccgagaaaacgtacagaagggaacccaccccttgttgaagccaatacc
ggaaagtactaccctaccagagaccttattttgacggataaattctcagaagaagtaagg
agatttatgagatggagagccgaggtagagttagcaaacaaaaacaatataaagaggata
aagctcgggaaagttcaaaacctcgaagaaagctatttaggtttcgaagttagagcttat
ccagttgaccactccatttacggtgcgacggcatacattattgaaggggacgttagtgta
gcctatactggagattttaggttgcatggcaaaaacggtaatctaacgaggaagttcatc
aaggcagcaaagaatgccagcatcttaatcacggagggaacaagagttagcaggaaaaac
gacgacttcaacgtctcagagaaggaggtttacgagaacgcgctaagaatagtcgaagaa
gctaaagggctggtgatagctgatttctcactcaggaacttcgagaggctcgagagcttc
aagagaatagcagagaaaactggaagggaacttgtcataaccaccaaggaagcctattat
ttacacgcgctaaagaccgcgggagaagctgatcatttaagggaagtgaaaatatacgag
gattcaaagacaaagccagagaagtgggagaagtggatactaagtaagtacaatgagcta
aaagtgactcctgaggagattactagagagcaggaaaactacatactatgtttttccttc
tacgatatgccaaagctcctcgacatcatgccaagtggaggggtttacatttactcctca
agcgaagcgtttacagaagaacaagtgtttagctttctccgcttatggaactggttacag
tatttcggctttgaagttcacgggttcaaggttgacgagcatggaaggccaatctttgaa
aagggattccatgcttcaggccacatctctaaggatgagctggttaaggttatcgaggaa
gttgacccagattacatagttcccgtccacaccgagaaccccgagtggtttagggaggtc
tgggaggataaggccataatcttgagaaacggcgatagttgggagatttag
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