Pyrococcus abyssi: PAB2385
Help
Entry
PAB2385 CDS
T00024
Name
(GenBank) ERCC2/XPD/rad3 DNA repair helicase, TFIIH helicase beta subunit homolog
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pab
Pyrococcus abyssi
Pathway
pab03022
Basal transcription factors
pab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PAB2385
09124 Replication and repair
03420 Nucleotide excision repair
PAB2385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pab03021
]
PAB2385
03036 Chromosome and associated proteins [BR:
pab03036
]
PAB2385
03400 DNA repair and recombination proteins [BR:
pab03400
]
PAB2385
Enzymes [BR:
pab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PAB2385
Transcription machinery [BR:
pab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PAB2385
Chromosome and associated proteins [BR:
pab03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PAB2385
DNA repair and recombination proteins [BR:
pab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PAB2385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
Helicase_C_2
DEAD_2
DEAD
ResIII
Terminase_6N
AAA_30
AAA_35
Motif
Other DBs
NCBI-ProteinID:
CAB50250
UniProt:
Q9UZ12
LinkDB
All DBs
Position
complement(1299744..1301657)
Genome browser
AA seq
637 aa
AA seq
DB search
MFEYFPYKTLRPHQDEFIELVRDVVKRGEKVIIEAPTGFGKTISVLAGVLPHAISFGYKV
IYLARTHKQMDRVIEELKRIREIAKVSGIEFRSRKDLCLHSYIRTFAQDAYTSMIVCKSL
KRLGKCKYFENLKEKRDKVKEIVEFFLENPSYPWEVIEYSNLLELCPYEVTRKVGEKANV
IVASYLYMVNPWIRQAFLDGLGLEYSDLIVIFDEAHNLPDQAISALSDRLSIRSVERAIK
EANEYGEKDIENFLSIFLRGLEIIYKEKLENYEISEVPLSPASIFEHVSSILGLRERDLL
RFLQEMVEVGDAIREDKIERNLPPRSYVGRVGEFLWNWISLADRSDYLHVFTREKGLALE
IVALDPSVALEFLEDVHSAILMSGTLSPLEAFRDIIGVNARLKKFPRMVKSENAIVLVAR
DVSTRGEERSPVLYKKLAEYIFEAVKIIPKNVGVFTASYEVLEGLISTNVHIRIEEEIGK
KVFIEKRDASSSENDALVAEFKAEAKGNGGVLFGVMGGRNSEGQDYSGDEMNGVILVGIP
YARPTPRVQAQIRYYEKKFPGKGRYYGYLLPAHRKLAQAAGRVHRSEEEKGSIVILDYRV
LWNTVKRDLPDWMVETMQPVTLPLMRIKLRKFWRAVK
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaatacttcccgtataagacgcttagacctcaccaagatgaatttatagagtta
gtcagggatgttgttaaaaggggagagaaggttataattgaggctccaactggttttgga
aagactataagtgttttggctggagttcttccgcacgcgatatccttcggatacaaggtg
atttacctagctagaactcacaagcagatggatagggttatagaggagctcaagaggata
agagaaattgcgaaggtaagtggcattgaattcagaagcaggaaagatctctgcctccac
tcctacataaggacgttcgcccaagatgcttatactagtatgatagtctgcaaaagcttg
aagaggcttggaaagtgcaagtactttgagaatttgaaagaaaagagggataaagttaaa
gagatcgttgaattcttccttgagaatccatcctatccttgggaggtcatagagtactcg
aacttgcttgagctttgtccttacgaggtaacgaggaaggttggagagaaggccaacgtt
atagtggcgagctacctttacatggtgaacccttggataaggcaggccttccttgatggg
ctcggcttggaatatagtgacctcatagttatcttcgacgaagctcacaaccttccggat
caggctatatcagctttgagcgataggttaagcattaggagcgttgagagggcaattaaa
gaggctaacgaatatggcgagaaggatattgaaaatttcctttcaatatttctaagagga
ttggaaataatctacaaagaaaagcttgagaactacgagatttcggaagttcccctatct
ccagcttccatatttgagcacgtctcctcaatactcgggctcagggagagagacctactt
agatttctccaagagatggtcgaggttggggatgccattagggaggacaaaattgagagg
aacctcccaccgaggagctacgtaggtagggtcggtgagttcctttggaactggatctcc
ttagctgatagaagcgattaccttcacgtgttcacgagggagaaaggactagcgctcgag
atagtggccttagatccttctgtagcgctcgagtttcttgaagatgttcactcggccata
ctaatgtccggaacgttatctcctctcgaggcctttagggatataataggggtaaacgcc
agactcaagaagttccctaggatggtaaaatcggagaacgcaatagttctcgtcgctaga
gatgtctccactaggggggaagagcggagcccagtcctttacaagaagttagcagaatac
atttttgaggcggttaagataattccgaagaacgttggtgtctttaccgcatcttacgag
gttttagaaggactaatatcgaccaatgtgcatataaggatagaagaagagatcggaaag
aaggttttcatagagaagagggatgcaagttcctcggagaatgatgcccttgtagccgaa
ttcaaggctgaagcaaagggaaacggcggagttctctttggtgttatgggaggtagaaac
agcgagggtcaagattatagtggagatgaaatgaatggtgtaatcttggtcggaatacct
tacgctaggcccacaccgagggttcaagctcagataaggtactacgagaagaagttccca
gggaagggaaggtattacggttacttacttccagctcatagaaagctagcccaagccgct
ggaagggttcacaggagcgaggaagaaaagggaagcatagtaatcttagactatagggtt
ctctggaataccgttaaaagggatctccccgattggatggttgaaacaatgcaacctgtg
acgttgcccttaatgaggattaaacttaggaagttctggagggccgtgaaatga
DBGET
integrated database retrieval system
