Parabacteroides absconsus: NEE14_001905
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Entry
NEE14_001905 CDS
T10821
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pabc Parabacteroides absconsus
Brite
KEGG Orthology (KO) [BR:
pabc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pabc03009
]
NEE14_001905 (rlmD)
Enzymes [BR:
pabc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NEE14_001905 (rlmD)
Ribosome biogenesis [BR:
pabc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NEE14_001905 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
TRM5-TYW2_MTfase
N6_N4_Mtase
Methyltransf_25
Methyltransf_15
Cons_hypoth95
PrmA
PCMT
Motif
Other DBs
NCBI-ProteinID:
WWV66769
LinkDB
All DBs
Position
complement(439523..440953)
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AA seq
476 aa
AA seq
DB search
MARKRKPLPVLEGVTITDVAAEGKALARVNDMVVFVPYVAPGDIVDIQLTRKKHSYAEGK
AIAFHKYAEERAVPFCEHFGVCGGCKWQHLPYEAQLRYKQKQVIDNLTRIGKIQMEEVLP
ILGSEHTQFYRNKLEFTFSNKKWLTEEQVQSGESFDCMNGVGFHIPGMFDKVLDIHKCWL
QDDISNRIRLAIKDYCLTHEGYPFFDLRNQEGFIRTLMIRTASTGDLMVVIVFFHEDKER
REALLSYVAEQFPEITSLQYVINEKCNDTITDQEILVYKGKDHIIEEMEGLKFKVGPKSF
YQTNSAQAYNLYKVARSFAQLTGNELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIED
AKVNSAFNHIENTLFYAGDMKDILTQDFINEHGRPDVIITDPPRAGMHDDVIKTILFARP
QRIVYVSCNPATQARDLSLLDGAYAVKKVQPVDMFPHTHHVENVVLLELRTETNQA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
ttggcacgaaaaagaaaaccgttacccgtcttggaaggggtaaccattacagatgtggcc
gccgaaggaaaggcgctggctcgggtaaacgacatggtggtatttgttccttatgtcgct
cctggtgatatagttgatatccagttaacacgcaaaaagcacagctatgccgaagggaaa
gctattgcgtttcacaaatatgcggaggaacgtgctgtacctttctgcgaacatttcggt
gtctgcggcggatgcaaatggcagcatctgccctacgaagcgcaactacgctacaaacag
aaacaagtcatcgacaacctgacccgcatcggtaaaatccaaatggaagaagtcctgcct
atcttaggctctgaacatacgcagttttatcgtaacaaactggagtttaccttttctaac
aagaaatggctgacggaagagcaggtgcagtccggcgaatcgttcgactgcatgaacggt
gtcggtttccatattccgggaatgttcgataaggtactggatattcacaaatgctggttg
caggacgatatttccaaccgcatccgcctggcgattaaagattactgcctgacgcacgag
ggttatcctttcttcgacctgcgcaaccaggaaggcttcatccgtacgctgatgatccgg
acggcttcgaccggcgacttgatggtggtaattgtcttcttccacgaagataaggaacgc
cgtgaagcgctgctttcctacgtggctgagcaattccctgaaatcacttcacttcaatac
gtgatcaacgagaaatgcaacgataccatcaccgaccaggaaatccttgtttataaaggg
aaagatcatatcatcgaagagatggaaggactgaagttcaaagtgggaccgaaatctttc
taccagacaaacagtgctcaggcttacaacttatacaaggtagcccgctcgttcgcccaa
ctgacggggaatgaactggtgtacgacctttataccggaaccggtaccatcgccaacttc
gtttctcgccaggcccgcaaagtgatcggtatcgaatacgtgcctgaagccatcgaagat
gccaaagtcaactctgccttcaaccacattgagaatacgctgttctacgctggcgacatg
aaagatatcctgacacaagacttcatcaacgaacacggacgtccggatgtcatcatcacc
gatccgccacgtgccggcatgcacgacgatgtgatcaagacaatcctgtttgcccgtccg
caacggattgtttatgtcagctgtaatccggcaactcaggcacgcgatttaagtctcctc
gacggagcgtatgccgtgaagaaagtacagccggtagatatgttcccacatactcaccac
gtggaaaatgtggtcttgctggaattaagaactgaaacaaaccaagcataa
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