Parabacteroides absconsus: NEE14_002470
Help
Entry
NEE14_002470 CDS
T10821
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pabc Parabacteroides absconsus
Pathway
pabc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pabc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEE14_002470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pabc03019
]
NEE14_002470
Enzymes [BR:
pabc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NEE14_002470
Messenger RNA biogenesis [BR:
pabc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NEE14_002470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Utp25_C
Cas3-like_C_2
HEM4
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WWV66875
LinkDB
All DBs
Position
complement(589986..591236)
Genome browser
AA seq
416 aa
AA seq
DB search
MRFDELNLEDAILDGLDAMNFEEATPVQEQTIPVILAKKDIIACAQTGTGKTAAYVLPII
NELSKGGFPDNAVNAIIMAPTRELAQQIDQQIAGFTYFVPISAVAIYGGTDGVAWEQQRR
GLEMGADIVIATPGRLLSYIKLGTVDLSQVSYFVLDEADRMLDMGFYDDIMQIYKQLPAS
CQIIMFSATMPPKIRTLAETILKNPEEIQLAISRPPETILQTAYICYDTQKIKILEDLFS
KARPQRVIIFASAKVKVKELTNTLRRMKFNVAEMHSDLEQSQREEVMKDFKNGKIDILVA
TDVVARGIDINDIRLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSPEEQTGFKRI
EDFLGKEVYKIPIDPSFGETPEYKPETRTRKKGRTQKSRNTSSRGHKRPSRKPQNS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgacgaattaaacttagaagatgcgattctggacggactggatgccatgaac
tttgaagaggcgactccggtacaagaacagacgattcctgttattttagctaaaaaagat
attatagcctgtgcacagaccggcacaggaaagacagccgcctatgtgttgcccatcatc
aacgaactgagtaaaggcggtttccccgacaatgcagtcaatgccattatcatggcgccg
actcgcgagttagcccaacaaatcgaccagcagattgcgggttttacctattttgttccc
atttcggctgtcgctatttatggcggaacagacggcgttgcctgggaacagcagcgccgc
ggacttgaaatgggcgccgacattgtgattgcaactcccggacgactgctgtcgtacatc
aagctcggcacggtcgatctctcgcaagtctcctacttcgttctcgacgaagccgaccgc
atgcttgatatgggcttttacgacgacatcatgcaaatatacaagcagctgccggcttcc
tgccagattattatgttttcggcaaccatgccgcccaaaatccggacgctggccgaaacc
attctgaagaatccggaagaaatacaactggctatttcccgtccgccggagaccatcttg
cagacggcttatatctgctatgacacgcagaagatcaagattctggaagatctcttcagc
aaggctcgcccgcagcgtgtgatcatcttcgcttcggccaaggtcaaggtgaaagaactg
acgaataccttgcggcggatgaagttcaatgtggcagagatgcattccgatctcgagcag
tcgcagcgcgaagaagtaatgaaagacttcaagaacggaaagattgatatcctggtggcg
acagatgtcgtcgcacgaggcatcgatatcaatgatatccgcctggtagtaaacttcgat
attccacatgatcctgaagattatgtacaccgcatcggccgtaccgcacgcggcacaaac
ggagaaggtttggccatcacctttgtttcgccagaagaacagaccggattcaagcgtatt
gaagatttcttgggcaaggaagtctacaaaatcccaatcgatccgtcgttcggtgaaaca
cctgaatacaaacccgaaacccgaacccggaagaaaggccggacacagaaaagcagaaat
acatcttcacgaggccacaaacgcccgtcacgcaaaccacagaattcataa
DBGET
integrated database retrieval system
