Parabacteroides absconsus: NEE14_009935
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Entry
NEE14_009935 CDS
T10821
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pabc Parabacteroides absconsus
Brite
KEGG Orthology (KO) [BR:
pabc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pabc03032
]
NEE14_009935 (topA)
03400 DNA repair and recombination proteins [BR:
pabc03400
]
NEE14_009935 (topA)
Enzymes [BR:
pabc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NEE14_009935 (topA)
DNA replication proteins [BR:
pabc03032
]
Prokaryotic type
DNA Topoisomerases
NEE14_009935 (topA)
DNA repair and recombination proteins [BR:
pabc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NEE14_009935 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
MarR_2
Motif
Other DBs
NCBI-ProteinID:
WWV65335
LinkDB
All DBs
Position
2277116..2279461
Genome browser
AA seq
781 aa
AA seq
DB search
MQKNLVIVESPAKAKTIEKFLGKDYKVLSSYGHIRDLKTKQFSIDIEHNYAPQYEIPADK
KKLVSELKAESKNAEMVWLASDEDREGEAISWHLYEVLGLKPETTRRIVFHEITKTAILH
AIETPRSIDMNLVNAQQARRVLDRIVGFQLSPILWRKVKPALSAGRVQSVAVRLIVERER
EIQDFVSEAAYRVTANFILPDGKTILKAELNRRLKTKEEAQAFLEACQHATFTIDDISKK
PVRKSPAPPFTTSTLQQEAARKLGYSVSQTMMIAQRLYESGLITYMRTDSFNLSDLALGT
TKEAILESYGEKYYKFRQYHTKSKGAQEAHEAIRPTYIAKAEIDGTAQERKLYDLIRKRT
IACQMADAELERTTISVDISGQKEKFVATGEVVVFDGFLQVYHESTDDDQEKEQGNTLLP
AVHLQDALQLKEATATERFTQRPPRYTEATLVRRLEELGIGRPSTYAPTIQTIQNREYVV
KGDKEGTERAFTILTLNKKGIQESSKTEMVGADRNKLMPTDIGIVVNDFLMEYFQLVMDY
NFTAKVEKEFDAIAEGEENWTKVIDNFYKVFHPIVEQTSAIRTEHKVGERQLGIDPKSGK
PVFVKIGRFGPVAQIGESNPDKDNEKPQFATLLKGQSIETITLEEALKLFELPRTVGEYE
GKVVVAAIGRFGPFIRHDGKFVSIPKDKNPISITLDEAIELIQQKRAKDENRFIKKFEEE
PELEILNGRYGPYIAYKGKNYRIPKTGYTPAEMTLDDCMKLIKEADQKPATKKRVTRKKA
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaatctggtaatagtggagtctccggccaaggcaaaaaccattgaaaagttc
ttgggtaaagactataaggttttgtcgagctatggacacatccgcgacttgaaaacgaaa
caattcagtattgacattgagcataattacgctcctcaatacgaaattccggcagataag
aaaaagctggtttctgaactcaaagctgaatctaagaacgccgaaatggtctggcttgct
tccgatgaggaccgcgaaggagaagccatttcatggcatttatatgaagtcttaggactg
aaacctgaaacaacacgccgaatcgttttccatgagattaccaagacagctatcttacat
gctattgaaacgccacgcagcatcgatatgaacctggtcaacgcccaacaggcacgccga
gtactggatcgtatcgtaggcttccagctttctcctattttgtggagaaaagtcaagccc
gccttatctgccggacgtgtacaatcggtagctgtccggctgatcgtggaacgagaacgt
gaaattcaggatttcgtatcagaggcggcctatcgggtaacagcaaatttcatccttcct
gacggtaagacaatattgaaagcagaattaaaccgtcgcctgaaaacgaaggaagaagca
caggcatttctggaggcttgccaacatgcgacctttaccatcgatgatatcagtaagaaa
ccggtacggaaatctccggcgcccccgttcactacatcaactttgcaacaggaagcggcc
cgaaaattaggctactcagtttctcaaaccatgatgattgcccagcgtctgtatgaatcc
ggattaattacctatatgcgtaccgactcattcaatttgagtgacttagctttagggaca
accaaagaagctattctggaatcatacggagaaaaatattataagttccgccagtatcat
acaaagagcaaaggagcacaagaggctcacgaagccattcgtccgacgtatattgccaag
gcagaaatcgacggtacggcccaggaacgcaagttgtatgatctgatccgcaaacggact
atcgcctgccagatggccgatgccgaattggaacggactaccatctctgtggatatcagc
ggacagaaagagaaattcgtagctacgggtgaagtcgttgtattcgatggatttctgcaa
gtctaccacgaaagtacggatgacgatcaggaaaaagaacaaggaaacacattgctgccc
gccgtccatctgcaagatgccttacaactgaaggaagcaacggctacggaacgtttcacc
cagcgtccgccccgctatacagaagcgacattagtccgtcgtctggaagaattaggtatt
ggccgcccgtcaacatacgcgccaacaatccagacaatccagaaccgggagtatgttgta
aaaggagataaagaaggaactgagcgtgcatttaccatcctgacattaaataagaagggg
attcaggaaagcagcaagaccgaaatggtcggagccgaccgaaataagttaatgcctacc
gatatcggcattgtggtgaatgacttcctgatggaatatttccaattagtcatggactac
aactttaccgccaaggtagaaaaagaattcgatgccattgccgaaggtgaagaaaactgg
acgaaagtcattgataatttctacaaggtattccacccgattgttgaacagacttcggcc
atccgcacagaacataaagtgggcgaacgtcaattaggtattgatccgaaaagcggaaaa
cctgttttcgtcaagatcggccgtttcggtccggttgcccagataggtgaatccaatccg
gataaggacaacgagaaacctcagtttgccaccttgttaaaaggccagtctattgaaacc
atcacattagaagaagccttgaagttattcgaactgccacgcacggtaggtgaatatgaa
gggaaagttgtagtagccgccatcggccgcttcggcccattcatccgtcatgatggcaag
ttcgtttctattcccaaagacaagaatccgatttccatcaccttagatgaagccatcgaa
ctgattcagcaaaaacgggcgaaagatgagaaccgtttcatcaagaagttcgaggaagaa
ccagagctggaaatcttgaacggccgctacggaccttacattgcgtataaaggcaagaat
taccggattcccaaaaccggctatacgcctgccgaaatgactttggatgattgcatgaag
ctgatcaaagaagcagatcagaaaccggcgacgaagaaacgggttacccgcaagaaagca
gaataa
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