Parabacteroides absconsus: NEE14_012120
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Entry
NEE14_012120 CDS
T10821
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pabc Parabacteroides absconsus
Pathway
pabc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pabc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEE14_012120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pabc03019
]
NEE14_012120
03009 Ribosome biogenesis [BR:
pabc03009
]
NEE14_012120
Enzymes [BR:
pabc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NEE14_012120
Messenger RNA biogenesis [BR:
pabc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NEE14_012120
Ribosome biogenesis [BR:
pabc03009
]
Prokaryotic type
rRNA helicases
NEE14_012120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RecG_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WWV65735
UniProt:
A0ABZ2II66
LinkDB
All DBs
Position
complement(2844566..2846305)
Genome browser
AA seq
579 aa
AA seq
DB search
MKTFEELGVAAPILKAIQELGYVSPMPVQEEVIPYLLGQDNDVIALAQTGTGKTAAFGLP
ILQKIEVEDYQPQALVLCPTRELCLQIADDLNDYSKYIDHLRVLPVYGGSSIESQIKTLK
RGVHVVVATPGRLLDLMNRKTVDLSHIRNVIMDEADEMLNMGFTDSINAILAEVPASRNM
LLFSATMPQGIAAITKQYMNHPKEIVIGNKNEGNKNIRDIYFMVRAQDKYLALKRIADFY
PNIYAIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNLQLLVATD
VAARGLDVDDLTHVINYGLPDDIESYTHRRGRTGRAGKTGISISICHIREKGKIKEIERV
INKKFEKGVMPSGKEICAKQLFNLVDQIEKVKVNEEEIAELMPQIYRKLEWLDKEDIIKR
MVSLEFNRMIDYYKDADEIETVDEKSSRKDREGGRKRKAEEGFVRFFINFGKTDGLYTNQ
LIDLVNKCVPGKVRIGRIDLMEKFSFFEVEEKEARRVEKCMNNFEVDGRRIVVEEAQEKG
EGKGKEKERKRRSTAQKRFERANGKPGKQSFGDKKRKKK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttgaagaattaggagttgccgcaccgatattaaaggcaattcaggaactg
gggtatgtttccccgatgcccgtacaagaggaagtgattccttatttactgggacaagat
aatgatgttattgctttggctcagacaggaaccggtaaaacggctgcctttggtctgcct
attttacagaagatagaggtggaagattaccagcctcaagcattggtattatgcccgaca
cgggagctctgcttgcaaatcgccgacgatttgaatgactattccaaatatattgatcac
ctgcgtgtactgcctgtatatggtggttccagcattgaaagtcagatcaagacgctgaaa
cgtggtgttcacgtcgttgtagcgacaccgggacgattactcgacctgatgaaccggaaa
acggtcgatctgagtcatatccgcaatgtcatcatggacgaggccgacgaaatgctgaac
atgggatttactgacagcatcaatgcgatcctggcggaggttccggcttcccgtaatatg
ctgctcttctcggcaaccatgccacaagggattgcagcgattaccaaacagtacatgaat
cacccgaaagagatcgtcattggtaacaagaacgaagggaataagaatatccgggatatc
tacttcatggttcgtgcccaggataaatacctggcgttaaaacgtatcgccgacttctat
ccgaatatttacgccatcattttctgccggacacgtaaggaaacgcaggagatagccgat
aaactgatccaggacggatacaatgccgattcactgcacggcgaactgagtcaggcgcaa
cgcgactatgtgatgcagaagttccgtatcaagaacctgcagttgctggttgcaaccgac
gtagctgcccgtggtctggatgtagatgatctgacccacgtgatcaactatggcttaccg
gatgatatcgaatcgtatacacaccgccgcggacgtaccggaagagccgggaaaaccggt
atttccatctccatctgccatatacgcgagaaagggaagatcaaggaaatcgagcgggtt
atcaacaagaagttcgagaaaggcgtgatgccttcaggaaaggaaatctgcgccaaacag
cttttcaacctggttgaccagattgagaaagtaaaggtgaacgaagaagaaatcgccgaa
ctgatgccgcagatctaccgcaagctggagtggctggacaaggaagacatcatcaagcgt
atggtttctctggaattcaaccgcatgattgattattacaaagacgcggacgaaattgaa
accgttgatgagaaatccagccggaaagaccgcgaaggcggaagaaaacggaaagcagaa
gaaggctttgtccgtttcttcatcaacttcggaaagaccgatggcttatacaccaaccag
ctgatcgacctagtcaacaaatgtgttccgggaaaagtccggatcggccggatcgacctg
atggagaaattctcattcttcgaagtggaagagaaggaagcccgccgggtagaaaagtgc
atgaacaacttcgaagtggacggccggcgaatcgttgtggaagaagcccaggaaaaagga
gaaggaaaagggaaggagaaagaacggaaacgccgcagcaccgcccagaaacgcttcgaa
cgggccaacggaaagccgggcaaacaatcattcggcgataaaaaacggaaaaagaaataa
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