Pyrodictium abyssi: PABY_02730
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Entry
PABY_02730 CDS
T09712
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
pabi
Pyrodictium abyssi
Pathway
pabi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PABY_02730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pabi03019
]
PABY_02730
Messenger RNA biogenesis [BR:
pabi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PABY_02730
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PABY_02730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Auto_anti-p27
Zn_ribbon_Nudix
FtrD-like
C1_1
Motif
Other DBs
NCBI-ProteinID:
BES80706
LinkDB
All DBs
Position
complement(252168..252770)
Genome browser
AA seq
200 aa
AA seq
DB search
MLRSVEELVGRRVFPGEPLCTVEEFIPGEGVYVDDGYIRAARFGQVEVDLVARRISVKPV
SMKPRLPKRNSIVYGAVYAIPRDELALVKIFADERMIPYNGSFSGVLHILQVVDVPGGKS
MYDFVRPGDFIRATVLSSSLPYMLSIKKSQDGVILAYCSVCGAPLYRVPGSPRLTCMRCG
NEEQRRVSPLYMLSSRRRRR
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgctgaggagtgtcgaggaactagtagggcgtagagtcttcccaggcgagccgctatgc
actgtagaagagttcataccgggcgaaggcgtttatgttgacgatggatacatacgtgca
gcacggttcggccaggtggaggtagacctcgtagcccgtaggattagtgtaaaaccggta
tcaatgaagcctagacttcccaagcgtaacagtatcgtatacggggcagtctatgcgata
ccgcgcgacgagctggcactagtcaagatatttgcagatgagcgcatgatcccctataat
ggctcctttagcggggttctacatatactccaggtggttgatgtccctggtggtaaaagc
atgtatgactttgtaagacctggcgactttatccgcgcgaccgtgttatcatcgtcactc
ccctacatgctctcgataaagaagtcccaggatggcgtgatactagcgtactgctcggtt
tgcggcgcgcctttataccgcgtacctggtagtccccgcttaacgtgtatgcgctgcggt
aacgaagaacagagaagagtatcaccactatacatgctatcctcacgccgtaggagaagg
tag
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integrated database retrieval system
