KEGG   Pyrodictium abyssi: PABY_08900
Entry
PABY_08900        CDS       T09712                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pabi  Pyrodictium abyssi
Brite
KEGG Orthology (KO) [BR:pabi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pabi03400]
    PABY_08900
Enzymes [BR:pabi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PABY_08900
    5.6.2.6  RNA 3'-5' helicase
     PABY_08900
DNA repair and recombination proteins [BR:pabi03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    PABY_08900
SSDB
Motif
Pfam: DEAD DEAD_assoc Helicase_C WH_Lhr ResIII Cas3-like_C_2 DEXQc_Suv3 DUF7479 DUF5817
Other DBs
NCBI-ProteinID: BES81323
LinkDB
Position
complement(804638..807385)
AA seq 915 aa
MIPEVLRGNHVLAIAPTGSGKTEAALLPIFSRLIGSKSKGIYAVYITPLRSLNRDIFKRM
INIASDVRLTLEVRHGDSTAAEKRRFLENPPHVMVTTPESFYFLLSVEKFRQNISNLKYI
VVDEVHELVSGKRGAELSLAIERVARLYTRNRLQIIGLSATVSDPYTVARLLMGDRYVRI
VETEKAVKRYHITVVAPAIHSSGSNRDDGLKSQRETLARVELIKKVVSENPGNSIIFVNT
RDTAEVLGALLKQAMGEDRIEVHHGSLSREKRVDAEQRLRSGKVKAVVATSSLELGIDVG
AIDLVVQYMSPRQVVKLVQRVGRSGHRIGGISRGIIVAATNIFDILESAVIAARAMRGNL
ERLQYPIKPYDALIHQITGMLIELGEIDIDTIYSIVTCSGYYKDLSLDELYQVISYMEAS
RIARVRDRKISMGPMAKSYYFSVTMIPDTKQYNVYEVGTGRKLGVLDEEFVTTLEQGAKF
VLGGQVWEVVDIADDSVRVRHTKEDKLIPPAWEGDLIPVEYNVAREIGSILRRYEKQGEK
VLSEYPLDDNSRKLVQNKILKHMSKGLPLPTDRRVVIEHYGDVFIIYSFLGSRGNKALEY
LISAYISEVKGYPPVTASTPYIVAIRLASVERADFIADVLRKITSLPSNEVDSLLRRAVL
KSKLFQWIMLYVALRSGAVKRTANTDIRHVKTIIHKLRDTILGEEAYREISVRKVDTYVL
HKFLEEIRTGRIEVKAVSLKTPSPITEDAIAEARFGDRVTTDGLPSTILVEAIKRRIASK
DVIFLCLMCGKIWTRKLLHVNSNNIECPRCGARMIYPALAKERIEAARALIEKQRRGAKL
SQAERKAVREVMDAANLVLSYGKKAVEALVSTGIGTYTAKRVLQKLVFGEEAFYRALIEA
EVNYHKYKHKLEKRK
NT seq 2748 nt   +upstreamnt  +downstreamnt
gtgatacccgaggttcttcgaggaaaccatgtactggctatcgctcccactggtagtggt
aagactgaggccgcacttctccccatattctcaaggcttataggctctaagtcaaaaggc
atctatgctgtatatataacgcccttgcgtagtcttaaccgtgatatatttaagcgcatg
ataaatatagcttcagatgtaaggcttacactagaggtcagacatggagatagtactgcg
gccgagaaaaggcggttccttgaaaaccctccccacgtaatggtgactacacccgagtca
ttctatttcctattgagcgtggaaaaattccgccaaaatatcagcaatcttaagtacata
gttgtggacgaggtacacgagcttgtttcaggcaagcgtggagcagagctatccctggct
attgaacgcgtagcacgactatatacgagaaatagactccaaattataggactatctgct
acagttagtgatccatatacagtggctaggctactcatgggcgatagatacgtccgaata
gttgagacagagaaagccgtaaagcgctaccacataactgtcgtcgccccagcaattcat
agcagtggtagcaatagggatgatgggctaaagtcccagagagaaacactggctagagtg
gagctaataaagaaagtagtgtcggagaatcctggcaactcgataatattcgttaacacg
cgcgatacagcggaagtcttaggtgcattgctgaaacaagctatgggcgaggacagaata
gaggtacatcatggcagtctaagccgcgaaaagcgtgtagatgctgaacaaagacttcga
agcggcaaagtgaaggcagttgtagctacatctagtctggaactaggtatcgacgtaggc
gcaatagaccttgtagtacagtacatgtctcctagacaagtagtgaaactagttcagcgt
gtaggcagatccgggcacagaataggtggcatatctaggggcataatagtagcagccaca
aacatattcgatatactggagtctgctgttatagctgctagagcgatgcgaggcaactta
gaaagactacagtatcctatcaaaccatatgatgcacttatacaccagattaccggtatg
ctcatagagctaggcgaaatagacatagacaccatctacagtattgtaacgtgcagcggc
tactataaggacctaagcttagacgagctataccaagtgataagctacatggaggcatcc
agaatagcaagagtcagggacagaaaaatcagtatgggtcccatggctaagagctactac
ttcagcgtcacaatgatacccgatacgaagcagtacaatgtctacgaagtaggtacagga
aggaaactcggcgtcctagacgaagagttcgttacgacactagaacaaggggccaaattc
gtactaggagggcaggtttgggaggtagtagatattgcagatgacagtgtgagagttagg
cacacaaaagaagacaagctcatacctccggcatgggagggtgacttaatccccgtagag
tataatgttgcccgcgagattggcagtatactccgcaggtacgaaaaacagggcgaaaaa
gtgctaagcgaatacccacttgacgataattctagaaaattagtgcaaaataaaatatta
aagcatatgtcgaagggtcttcctcttccaaccgataggagagtagttatcgagcactat
ggcgatgtattcattatatacagtttccttggtagccgcggcaacaaggcactagaatat
ctgatctcggcttatatatccgaagtaaagggttatccacctgtaacagcaagcacaccc
tatattgtagctataagactcgcttcagtagaacgcgccgacttcatagccgatgtactg
cggaaaataactagcctacctagtaatgaggtggattcgctactgcgtagagctgtcctt
aagagcaaactattccagtggataatgctctatgtagctcttcgaagcggagcggtaaag
agaacagccaatacagacataagacatgtgaagacgattatccataagctgagggacact
atactcggagaggaagcatacagagaaataagtgtaagaaaggtggatacatacgttctg
cacaagttcctcgaggaaataaggactggtaggatagaagtaaaggctgtaagtttgaaa
acaccgtcgcctatcacagaggacgctatagcagaagcacgattcggggaccgcgtaacg
acggatggtctaccgtcgacaatacttgttgaagcaataaaacgtaggatagcgtcaaaa
gacgtgatatttctctgcctgatgtgtggaaagatatggacaagaaagctactacacgtt
aacagcaataatatagagtgtccgcgctgcggtgcacgaatgatatatcctgccttagcc
aaagagcgcatagaagcagctagggcattaatcgagaaacagagacgtggagccaaactc
tcccaggcagagagaaaggctgttcgcgaagtcatggatgctgctaatctcgtactgagt
tacggcaaaaaggctgtagaagcccttgtatcaacgggcatcggcacgtatacagcaaag
cgggttctgcaaaaacttgtgtttggcgaagaggcgttttacagagctctcatagaggca
gaggtaaattatcataaatacaagcataagctcgaaaaacgaaaataa

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