Pyrodictium abyssi: PABY_09900
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Entry
PABY_09900 CDS
T09712
Symbol
rad50
Name
(GenBank) DNA double-strand break repair ATPase Rad50
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pabi
Pyrodictium abyssi
Brite
KEGG Orthology (KO) [BR:
pabi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pabi03400
]
PABY_09900 (rad50)
DNA repair and recombination proteins [BR:
pabi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PABY_09900 (rad50)
Archaeal homologous recombinant proteins
PABY_09900 (rad50)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
ABC_tran
AAA_29
AAA_27
Fib_alpha
BLOC1_2
TBCA_PH
Med9
NOCA1_mid
KIF21A_4th
Baculo_PEP_C
DUF8567
Prefoldin_2
GAS
FlaC_arch
DUF5927
DUF6011
DUF7540
Motif
Other DBs
NCBI-ProteinID:
BES81423
UniProt:
A0ABN6ZMG4
LinkDB
All DBs
Position
complement(896380..899130)
Genome browser
AA seq
916 aa
AA seq
DB search
MIIERVELENVLSHRRTRVDFGRGIIAIVGPNGAGKTSIIDAITYAIFGSHSRGARSRKD
ALIRLGASIARISVEFTANGRRYRLQKVIQRNGATQAYLYQVGNGTTRLLARGVESVKAE
LRKILGIDPVLADLLLVTRQGEIDEILVDKERRIDVMNTILKLRAIEKAYERLASILRLL
RAKKSMLEEQYRTEEARLREAEESAREYRKVVEELERLKPLLEEAEKEYVQLRDRINELR
RLKQRFDFLNAKKEELERALRRLEQEYEEARREYEIALNANEELKELEKLEESLRLLEEA
LSLANEVSRDRQLLVSLRSRLERIEAELEALPEAEHAKEEYERLRAVVDELEHDSKRYLH
VKSQLEQLEARARLLRERANNRMRNLLDKLRAAVPLDFPREPGKIIEKMESMISSLDKAI
DATRVKLENIHGQVEAKRSEIRDLEEKLMKLTEAQGKCPLCGRPLSDEHRVELISRMRAQ
KKRLEAELKRLEAQEHMLRRELRDLESRKRLLERLARTVQGEAKSIELMLREADDAEKQK
QELQQQYLELFAKYKEHEEARQRLRELEVWVNRYQRLRALADEYKSLEAEVTRLEKEVAE
REKLLKDILSRAGLDLEGLEEVSKRISDYREYIASVRSEAARLPQAEAKLHKLEAEIDRV
RSELESIVSELEEIGDIGSALEHAEARLVELEDRLRELRSRVARLEGMREKLETMVSKTE
VLRSRVSRLREELQRYGDAIHALERIRRALGPEGIPRVLRQAVRNILEYHLRDTLMKFNI
DFLDVRLEDDYSVVLVTREGEKTVSMLSGGERIALAIAYRLALARVVGERIESMIMDEPT
IHLDEEKRRELVEIIKYGLEASGLLQLIVVTHDREIEDAADKVVEVVKVDGASVVNIRSP
GDDVAGAGTVRELVAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
ttgataatagagcgcgtagagctggaaaacgtgctgagccatcggagaacacgggtagac
tttggacggggcataatagctatagttggtccaaacggtgccggcaagaccagcattatc
gatgctataacctacgcgatatttgggtcacacagccgtggcgcccgcagccgcaaagac
gcattaataaggcttggagcctccatagcgcgcattagcgtagagttcacggctaacggg
cgtaggtaccgtctgcagaaggttatacagcgcaatggtgctacgcaagcatacctttac
caggtaggcaacggcactaccaggcttctcgcacgcggcgttgaaagtgtgaaagcagag
ctacggaagatactaggcatagacccggttctagccgatttactgctcgtgactaggcag
ggggagatagacgagatactagtggacaaggagagacgcatcgatgtaatgaatactatt
ctgaagctaagggcgatagagaaggcttacgagcgcttagcatcgatactccgtctgcta
cgcgcaaagaagagtatgcttgaggaacagtatcgtacagaggaagcacgtctacgtgaa
gccgaggagagcgctcgggagtaccgtaaggttgttgaggagcttgaaaggctgaagcct
ctactagaggaagctgagaaggagtatgtccagctaagggatcgtatcaacgagctgcgg
aggcttaagcagcgcttcgacttcctaaacgctaagaaggaggagctcgaacgggcacta
aggaggcttgagcaggagtacgaagaggctaggagagagtatgagatagcgctaaacgcc
aatgaagagctgaaggagcttgaaaagcttgaagagagtctacggctactagaggaggca
ttaagcctcgcaaacgaggttagccgcgatagacaactcttggtctcgctccggtccaga
ctagagagaatcgaagcagaactagaagctcttccggaagccgagcacgcaaaggaggag
tatgaacgactccgagccgtggtggacgagcttgaacacgatagtaagcgctaccttcat
gtaaagtctcaactagagcagttagaagccagagctaggcttctccgcgaaagagcaaac
aataggatgaggaaccttctagataagttgagggccgcagtgcctctagattttccccgg
gaacccggcaagatcatagagaagatggagtctatgatttcaagtctggataaggctata
gatgctacaagggtgaagcttgagaacattcatggacaagttgaggctaagcgctcggag
atacgtgacctggaagagaagcttatgaagctcacagaagcccagggtaagtgccctctg
tgtggtaggcctctaagcgacgagcaccgtgtagaactcatatccaggatgagggcgcag
aagaagcgcctcgaggccgagctgaagaggctagaagcccaggagcacatgctccgcaga
gaactgcgggacttagagtcgcggaagaggctgctagagaggcttgcaaggaccgtccag
ggagaggctaagagcatcgagctcatgcttagagaggccgatgacgccgaaaagcagaag
caggagctccagcagcagtaccttgagcttttcgctaagtacaaggagcatgaagaggct
aggcagaggctccgtgagcttgaggtatgggtgaacaggtaccagaggcttcgtgcgcta
gctgacgagtataagtctcttgaggccgaggtaaccaggcttgagaaggaggtagctgag
cgcgagaagctgcttaaggatatactcagtagggctggtctagaccttgaaggactcgag
gaggtctccaaaaggataagcgactaccgtgagtatattgctagcgttcgtagcgaggct
gccaggcttcctcaggctgaagctaagctacataaactagaggctgagatagacagggtg
cggagtgagctggagagcatagtgagcgagcttgaggagatcggcgacattggctctgca
ctagagcatgccgaggcaaggctagtagagcttgaggacaggctcagggagcttagaagc
cgggtggccaggctcgagggtatgcgggagaagctcgagacaatggtgtcgaagaccgag
gttctccgtagccgggtatccaggctaagagaggagcttcagcgctatggggatgcgata
cacgccctggagaggatacgccgcgcattgggccccgaaggtatcccgagggtcctccgg
caagctgtgaggaatatcctcgagtaccatctaagggatacgctgatgaagtttaatata
gactttctcgatgttaggcttgaggacgactatagcgtcgtcctggtgacgcgtgaaggc
gaaaagactgtatctatgctcagtggtggtgagcgtatagcacttgcaatagcatacagg
cttgccttggcccgtgtggtgggggagcgcatagagtctatgataatggatgagccgact
atacatcttgacgaggagaagaggcgtgaactggtagagattatcaagtatggtcttgaa
gctagtgggctactacagctaatagtggtaacgcatgacagggagatagaggacgccgcg
gacaaggttgtagaggtggtcaaagtcgatggagcaagcgtcgtgaatatacgctcccct
ggggatgatgtggctggtgcagggacggtgcgtgagctagttgcccactag
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