Pyrodictium abyssi: PABY_10370
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Entry
PABY_10370 CDS
T09712
Symbol
gcvPB
Name
(GenBank) aminomethyl-transferring glycine dehydrogenase subunit GcvPB
KO
K00283
glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:
1.4.4.2
]
Organism
pabi
Pyrodictium abyssi
Pathway
pabi00260
Glycine, serine and threonine metabolism
pabi00630
Glyoxylate and dicarboxylate metabolism
pabi00670
One carbon pool by folate
pabi00785
Lipoic acid metabolism
pabi01100
Metabolic pathways
pabi01110
Biosynthesis of secondary metabolites
pabi01200
Carbon metabolism
Module
pabi_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
pabi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
PABY_10370 (gcvPB)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
PABY_10370 (gcvPB)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
PABY_10370 (gcvPB)
00670 One carbon pool by folate
PABY_10370 (gcvPB)
Enzymes [BR:
pabi01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
PABY_10370 (gcvPB)
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Paralog
GFIT
Motif
Pfam:
GcvP2_C
GDC-P
Aminotran_5
Aminotran_1_2
Beta_elim_lyase
Myo1_CA
DUF6020
Motif
Other DBs
NCBI-ProteinID:
BES81470
UniProt:
A0ABM8IV79
LinkDB
All DBs
Position
complement(942437..943996)
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AA seq
519 aa
AA seq
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MIPGARSGWRQARWSEPLVYELGSPDNSGFIRPYSDEDAELERVLGATPEEKLGRMLRDR
VPEIPGLSEIEVVRHFTRLSQMSYGVDVGPVPLGSCTMKYNPKISEDIARDPRIRYLHPY
QDPDTVQGLLEMLYLLERWLAELTGMDRCSLQTPAGAAGELAGALMIRKYFMDRGEDRDE
MLIPDSAHGTNPASAAMAGFKVVRIPTSENGTVDMEALDAALSERTAGIMLTNPNTLGIF
EDQILEIADKLHSIGALLYYDGANLNGIMGIVRPGDMGFDIIHLNLHKTFGAPHGGGGPG
AGVVCARGELVDYLPRPLIAKKGDRYYWDYECEKCIGRIRMFYGNIAPLVKAFIYIAMLG
GEGLREAAIQSVINTNYFIALMGGVDGYELPYDPERPRKHELVLSAKPLKQETGVTAEDI
AKALLDRGLHAPTIYFPLIVDEALMIEFTESEPRRQIEEYAVALQEIAREARRNPSALKQ
LPKNTSIGRLDNVYANHPRSVTPTFRVLRRRLQGEQLSL
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggagcaaggagtggctggagacaggcaagatggagcgagcccctggtatac
gagctaggaagccccgacaactccgggttcatacgtccctacagcgacgaagacgcagag
ctagaacgcgtactcggcgctacgccagaggagaagctcggccgtatgctccgggatagg
gtcccggagataccggggcttagcgagatagaggttgtacgccactttacgcggctaagc
cagatgagctacggcgtagacgtaggccccgtgccactaggctcgtgcactatgaagtac
aaccctaagataagcgaggatatagctagggaccctcgaatacgctacctacatccatac
caggaccccgacacggtgcaaggcctccttgagatgctctacctccttgagcgctggctc
gcagagctgaccggcatggataggtgcagcctacagacccctgccggcgctgctggagag
ctggcaggagcactaatgatacgcaaatacttcatggaccgaggcgaggaccgtgatgag
atgcttatcccggactccgcccacggcactaaccccgctagcgccgccatggcggggttc
aaggtagtaaggataccgacttcagagaatggaaccgtggacatggaggcactggatgcc
gcgttatccgagcggactgccggcataatgctgacaaaccccaacacactcggcatcttc
gaggaccagatactagagatagcagacaagctgcacagcataggtgcactcctatactac
gacggtgccaaccttaacggcataatgggtatcgtgcggcctggcgacatgggcttcgac
ataatacacctgaacctccacaagaccttcggcgcgccgcacggcggcggagggccgggt
gcaggcgtcgtatgtgcacggggagagctcgtcgactatcttccaagaccactcatagct
aagaagggtgaccgctactactgggactatgagtgcgagaaatgcataggaaggatacgc
atgttctatggcaacatagcgccgttggtaaaagccttcatatacatagccatgctggga
ggagaggggctccgggaggccgcgatacagagcgttatcaacactaactacttcatagcc
cttatggggggagttgacggctacgagctcccgtacgacccggagaggccgaggaagcac
gagctagtactctcagctaaaccactaaaacaagagacaggagtcacagccgaagacata
gcgaaggcactgctcgatagaggtctacacgcgccgacaatatacttcccacttatagtg
gacgaggcgcttatgatagagttcacggagtcggagccaagacgccagatagaggagtac
gccgtcgcgctccaggagatagccagggaggcccgccgcaacccctcagcgctcaagcag
ctgccaaagaacacttccatagggaggctagacaatgtgtacgccaaccacccgcgtagc
gtcacgccgacattccgcgtacttcggagaaggctacagggagagcaattatcgctatag
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