Pyrodictium abyssi: PABY_11300
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Entry
PABY_11300 CDS
T09712
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pabi
Pyrodictium abyssi
Pathway
pabi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PABY_11300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pabi03019
]
PABY_11300
03009 Ribosome biogenesis [BR:
pabi03009
]
PABY_11300
04131 Membrane trafficking [BR:
pabi04131
]
PABY_11300
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pabi04147
]
PABY_11300
Messenger RNA biogenesis [BR:
pabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
PABY_11300
Ribosome biogenesis [BR:
pabi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
PABY_11300
Membrane trafficking [BR:
pabi04131
]
SNARE
SNARE associated proteins
Others
PABY_11300
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PABY_11300
Exosome [BR:
pabi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PABY_11300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
TIP49
AAA_22
AAA_5
AAA_33
AAA_14
AAA_lid_PRS2_C
AAA_28
Vps4_C
nSTAND3
AAA_18
IstB_IS21
AAA_25
Mg_chelatase
RNA_helicase
AAA_24
ABC_tran
ATPase
DUF815
TsaE
Parvo_NS1
AAA_7
AAA_17
PhoH
AAA_3
Zeta_toxin
ATPase_2
bpMoxR
Molydop_binding
SLFN-g3_helicase
AAA_6
Motif
Other DBs
NCBI-ProteinID:
BES81563
LinkDB
All DBs
Position
complement(1025673..1027862)
Genome browser
AA seq
729 aa
AA seq
DB search
MPSEIQLRVAEARSRDVGRKIARISRETMARLGVEVGDFIEIEGPRGVAVAQVWPLHPDE
ADRNIIRIDGFIREAIGASIGDTVTVRKAAAVQPATRVVLAPTEPIRFSRDFVEYVKEYL
IRKPVTRGETIIVPVLGSGLRLVVVSTQPAQFVYITEQTQLEIREEPVREDQLRRGIPRV
TWEDIGDLEEAKEKIREIVELPMKHPELFKHLGIEPPKGILLFGPPGTGKTLLAKALANE
IGAYFIAINGPEIMSKYYGESEQRLREIFEEAEKNAPSIIFIDEIDAIAPRREEVTGEVE
KRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIEIRPPDKRARKEIL
QVHVRNMPLADDVDLDKIAEMTHGYTGADLAALAKEAAMSALRRFIKSGKIDLNKPIPAE
VLKELKVTMADFLDAMKYIQPSLIREIYIEVPEVHWDDIGGLEEAKQQLREAVEWPLKYP
EVFEQMGIRPPKGILLFGPPGTGKTLLAKAAATESGANFIAVRGPEVLSKWVGESEKAIR
QIFRRARQVAPTIIFFDEIDAIAPARGMRHDTSGVTDRIVNQLLTEMDGIEPLQHVVVIA
ATNRPDILDPALLRPGRFDRLIYVPPPDKKARLEILRIHTRKMPLADDVDLEKIAEKTEG
YTGADLEAVCREAAMIAVREAFKKNKKPTTTVVRMEHFEKALKAVQPSLTPEDIRRYERL
AKELKRMVL
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
gtgccttccgagattcagctccgtgttgctgaggcccgtagcagggatgtcggccggaag
attgcgcgtattagccgcgagactatggcccggctcggcgtggaggtcggcgactttatc
gagatcgaggggccccgcggcgtcgcagtagcgcaggtctggcccctccaccccgacgag
gctgacaggaacatcataaggatcgacggcttcatcagggaggccataggcgcgagcata
ggcgacacagtcaccgtaaggaaggctgcagccgtgcagcccgccacccgcgtcgtgctc
gccccgactgagccgatacgattcagccgcgacttcgtagagtacgtcaaggagtacctc
ataagaaagcccgtgacaagaggagagaccatcatagtcccagtgctaggcagcggacta
agactagtagtagtctccacccagccagcacaattcgtctacataaccgagcagacccag
ctcgagatacgcgaggagccagtacgcgaggaccagctgcgccgcggcatcccgcgggta
acctgggaggatatcggcgacctggaggaggccaaggagaagataagggagatagtagag
ctgccgatgaagcacccggagctcttcaagcacctgggcatcgagccgccgaagggcatc
ctgctcttcggcccgcctggcaccggcaagacgctcctagccaaggcgctcgccaacgag
ataggggcatacttcatagctatcaacggcccggagataatgagcaagtactacggcgag
agcgagcagaggctacgcgagatattcgaggaggccgagaagaacgcccccagcatcata
ttcatagacgagatagacgcgatagcgccgcgccgcgaggaggtcaccggcgaggtagag
aagcgcgtagtagcacagctactaaccctcatggacggcctgaagggccgtggccgcgtc
atagtgataggcgctactaaccggcccgacgcgctagacccagcgctgcgccgcccaggc
cgcttcgaccgcgagatagagatacggccgccggacaagagggccaggaaggagatacta
caggtacacgtccgcaacatgccgctcgcggacgacgtggacctcgacaagatagccgag
atgacccacggctacactggcgcagacctagcagcactcgccaaggaggcagctatgagc
gccctccggaggttcatcaagagcggcaagatagacctcaacaagccgatacccgccgag
gtgctcaaagagctaaaggtgaccatggccgacttcctggatgctatgaagtacatccaa
ccaagcctgataagggagatctacatcgaggtccctgaggtccactgggacgatatcggc
gggctggaggaggccaagcagcagctccgcgaggccgtagagtggccgctaaagtaccca
gaggtcttcgagcagatgggcatcagaccgccgaagggcatcctgctcttcggcccgcct
ggcaccggtaagaccctgctagccaaggccgcggcgacggagagcggtgctaacttcatc
gcggtacgcggcccagaggtgctaagcaagtgggtaggcgaaagcgagaaggctatccgc
cagatattccgccgcgcccgccaggtagcgccgaccatcatattcttcgacgagatagac
gcgatagcgccggcgcgcggcatgaggcacgatactagcggcgtcacagaccgcatagtc
aaccagctgctaacagagatggatggcatcgagccactacagcacgtcgtggtgatagcc
gctacgaacaggccggatatactcgacccggcgctgctgaggccaggccgcttcgaccgg
ctcatctacgtgccgccgcccgacaagaaggcacgcctagagatactcaggatacacacg
aggaagatgccgctagcagacgacgtagacctggagaagatcgcggagaagacagagggc
tataccggcgcagacctggaggctgtctgccgcgaggccgcaatgatagctgttagggag
gcgttcaagaagaacaagaagcccaccacgaccgtggtccggatggagcacttcgagaag
gccttgaaggccgtgcagccgagcctaacaccggaggacataaggcgctacgagaggcta
gcgaaagagctcaagcgcatggtcctgtga
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