KEGG   Pyrodictium abyssi: PABY_22040
Entry
PABY_22040        CDS       T09712                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pabi  Pyrodictium abyssi
Pathway
pabi03030  DNA replication
pabi03410  Base excision repair
pabi03420  Nucleotide excision repair
pabi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pabi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PABY_22040
   03410 Base excision repair
    PABY_22040
   03420 Nucleotide excision repair
    PABY_22040
   03430 Mismatch repair
    PABY_22040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pabi03032]
    PABY_22040
   03400 DNA repair and recombination proteins [BR:pabi03400]
    PABY_22040
Enzymes [BR:pabi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PABY_22040
    6.5.1.6  DNA ligase (ATP or NAD+)
     PABY_22040
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PABY_22040
DNA replication proteins [BR:pabi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PABY_22040
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PABY_22040
DNA repair and recombination proteins [BR:pabi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PABY_22040
   NER (nucleotide excision repair)
    Other NER factors
     PABY_22040
   MMR (mismatch excision repair)
    Other MMR factors
     PABY_22040
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 RNA_ligase DUF6374
Other DBs
NCBI-ProteinID: BES82637
UniProt: A0ABM8IYM1
LinkDB
Position
1994901..1996712
AA seq 603 aa
MPMPFSILADTFEKLERVTARTQMLLYLVELFKKTPPDVIDKVVYFLQGKLWPDWKGLPE
LGVGEKLLIKAAAISLHVSEQQLEQLAKRLGDIGQAIEMVKAEKAKKAPAPGLLAFIKRQ
DSSTVGLTVEKVYDTLAKIAQAQGEGSREIKLKLLAGLLAEASPKEAKYIARFVEGKLRL
GVGDATIMEALAVVYAGSASMRSIVERAYNLRADLGLVAKILATKGVDELKHIKPEVGIP
IRPMLAERLNDAAEILRKLGGKALVEYKYDGERAQIHKKGDKIWIFSRRLENITYMYPDV
VEMARKGIKANEAIVEGEIVAIDPETGELRPFQVLMHRRRKHDIHLVLSEIPVAVYLFDT
IYVDGEDLTVKPLPKRHETLEKIIEPSERWQLAKGIVTDSPEELETFFLKAIEDGAEGVM
AKAIHDRSIYQAGARGWLWIKYKRDYKSEMSDTVDLVVIGALYGKGRRGGKFGALLMAAY
DPETDTFKSVCKVGSGFTDEDLERLDDILKPYIRDHKPARVDSQMKPDVWVEPALVAEII
GAELTLSPIHTCCYGWVRKGAGISIRFPRFIRWRPDKGPEDATTTKELYEMYLRQLRKVK
EAT
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgcctatgccgttctctatactagctgatacgttcgagaagcttgaaagagttacagca
cgtacccagatgctcctctaccttgtagaactattcaagaaaactcctccagatgtgata
gacaaggtagtctacttcctgcaaggcaagctgtggccagactggaaggggctaccggag
ctcggcgtgggcgagaagctcctcataaaggcggcagctatatcgctgcatgtgtcggag
cagcagctggagcagctagctaaaagactgggcgatataggtcaagccatagagatggtt
aaagccgagaaagcgaagaaggcgccagcaccaggcctcctagcattcattaagagacag
gacagctccaccgtgggccttacggtagaaaaagtgtacgacaccctagctaagatcgcg
caggcgcagggagaagggagccgagagataaagctgaagctgcttgcaggcctcctagcg
gaggcttccccgaaagaagccaagtacattgctaggttcgtcgagggtaagctaaggctc
ggtgtaggagacgccacgataatggaagccctagcggtagtctatgctggcagtgcctct
atgaggagcatagtcgagagggcatacaaccttcgcgccgatctaggcctagtggctaag
atactggctacaaagggtgtggatgagctcaaacacataaagcccgaggtaggcataccc
attaggcccatgctggcagagaggctcaatgatgcggcggagatactccgcaaactgggt
ggaaaagcactagtagagtacaagtatgacggtgaacgcgcgcagatacacaagaaagga
gataagatatggatattctcgcggcggctagagaacataacctacatgtatcccgatgta
gtggagatggctaggaagggtataaaggcaaacgaggctatagtagaaggcgagatagta
gcaatagacccggagactggcgaactaaggccattccaggtgctgatgcatcggaggcgc
aaacacgatatccacctagtcctctccgagataccagtagcagtatacctattcgacaca
atatacgtagacggcgaagacctcacagtaaagcccctacccaagaggcacgagacgctc
gaaaagataatagaaccaagcgagagatggcagctagcgaaaggcatagttaccgatagc
cctgaggaactcgagacattcttcctcaaagccatagaggatggcgccgaaggcgtcatg
gctaaggctatacatgaccgtagcatataccaggcaggggcacgtggctggctatggata
aagtacaagcgtgactacaagtcagagatgagcgacaccgtagaccttgtagtcatcggc
gcgctctacggaaaggggagacgcggcggcaaattcggcgcactgctcatggcggcatac
gaccccgagacagacacattcaagagcgtatgcaaggtgggcagcggcttcacagacgaa
gacctagagcgtctagatgacatcctcaagccatacatacgcgaccacaagccagcacgt
gttgacagccagatgaagccagacgtctgggtcgagccagcactagtagcagagataatc
ggcgccgagctaacgctgagccctatacacacctgctgctacggctgggtcagaaaagga
gcaggcatatccataaggttcccacggttcataagatggcggcccgacaaagggccagag
gacgctacaacgactaaagagctgtacgagatgtacctaaggcagctgaggaaagtcaaa
gaagcgacataa

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