Pyrodictium abyssi: PABY_22550
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Entry
PABY_22550 CDS
T09712
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pabi
Pyrodictium abyssi
Brite
KEGG Orthology (KO) [BR:
pabi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pabi03016
]
PABY_22550
Enzymes [BR:
pabi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PABY_22550
Transfer RNA biogenesis [BR:
pabi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PABY_22550
Prokaryotic type
tRNA splicing ligases
PABY_22550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BES82688
UniProt:
A0ABM8IYR8
LinkDB
All DBs
Position
2050191..2051645
Genome browser
AA seq
484 aa
AA seq
DB search
MSARIPLKRVSDYEWMIPKGAKPCMRVPSIIFADDFLLEKMKGDLTLVQAANVACLQGIQ
KYSIVMPDGHQGYGFPIGGVAAMSIDEDGVISPGGVGYDINCGVRVIRTNLDVKDVKPKL
RELIEELFRNIPSGLGSTGKVRLSVQELDRVLNEGVEWAVQKGYGWADDPEHIEERGSWS
LADASKVSQRAKRRGAEQLGTLGSGNHFLEVQVVDKIYEPEIAKAMGITHEGQIIVMVHT
GSRGLGHQVASDYLMIMERAMRKYGIRPPDRELASVPYSTREAQDYLRAMAAAANFAWTN
RQLITYWTRESFQRVFHRDPDQLDMKIVYDVAHNIAKIEEHDVDGKKMKVIVHRKGATRA
FPPGHPEIPKDYQSIGQPVLIPGSMGTASYILVGVPTGARAWFTAPHGAGRWMSRAAAKR
SRSYHEVIRELEQKGILIRASNRATVVEEMPQAYKDVDRVALVAHKVGIANIVVRLRPIA
VTKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgaggatacccctgaagagggttagcgactacgaatggatgatacccaagggc
gctaagccctgcatgagggtcccctcgataatcttcgccgacgacttcctgctcgagaag
atgaagggcgacctcacgctagtacaggctgccaacgttgcatgcctccagggtatacag
aagtacagcatcgtgatgccagacggccaccagggctacggcttccccattggcggcgta
gcggccatgtctatagacgaggatggtgtgataagccccggcggtgtgggctacgacatc
aactgtggcgtgcgcgtcatacgtacaaacctcgacgtaaaggatgtgaagcctaagcta
cgcgagctcatagaggagctgttccgcaacatacccagcggcctcggcagcacaggcaag
gttcgtctcagcgtgcaggagctagaccgggtgctgaacgagggtgtcgagtgggcggtg
cagaagggctacggctgggctgacgacccggagcacatcgaggagcggggtagctggagc
ctggcagacgctagcaaggtgagccagcgcgctaagagacgtggtgccgagcagctaggc
accctcggcagcggcaaccacttcctcgaggtacaagttgtcgacaagatatacgagcca
gagatagccaaggccatgggcataacccacgagggccagataatagttatggtgcacacc
ggcagccgtggcctaggccaccaggtcgcgagcgactacctaatgataatggagcgcgcc
atgaggaagtacggtataaggccgccagaccgcgagctggccagcgtgccctacagcacc
cgcgaggcccaggactacctccgcgcaatggccgctgcggcgaacttcgcctggaccaat
aggcagctcataacctactggacgcgtgagagcttccagcgcgtattccaccgcgaccca
gaccagctcgacatgaagatagtctacgacgtagcccataacatagccaagatagaggag
cacgacgtagacggcaagaagatgaaggtcatagtgcaccgtaagggcgctacaagggcc
ttcccgccaggccacccagagatacccaaggactaccagtcaataggccagcccgtgctc
atacccggcagcatgggcacagcgagctacatactggtaggcgtccccacgggcgcccgc
gcctggttcacagcaccccacggcgcaggccgctggatgagccgcgcagcagccaagaga
agcaggagctaccacgaggtcataagggagctagagcagaagggcatactgatacgcgct
agcaaccgcgccacggttgtagaggagatgccacaggcctacaaggacgtagaccgcgta
gccctcgtagcccacaaggtaggcatagcaaatatcgtcgtaaggctacgccccatagcg
gtaacgaagggctaa
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