Pseudomonas abietaniphila: ABDX87_07115
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Entry
ABDX87_07115 CDS
T11725
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pabn Pseudomonas abietaniphila
Brite
KEGG Orthology (KO) [BR:
pabn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pabn03009
]
ABDX87_07115
Enzymes [BR:
pabn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABDX87_07115
Ribosome biogenesis [BR:
pabn03009
]
Prokaryotic type
rRNA helicases
ABDX87_07115
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
XAW94810
LinkDB
All DBs
Position
complement(1594021..1595373)
Genome browser
AA seq
450 aa
AA seq
DB search
MFSQFALHERLLKAVAELNFVEPTPVQTAAIPLALEGRDLRVTAQTGSGKTAAFVLPMLN
RLMGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRK
VPDILIGTPGRLLEQLNAGNLDLKQVELLVLDEADRMLDMGFAEDVERLAGECANRQQTM
LFSATTGGSGLREMIAKVLKDPQHLQVNSVSELAAGTRQQIITADHNVHKEQVLNWLLAN
ETYQKAIIFTNTRAMADRIYGRLVALEYKAFVLHGDKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDMVINFDMPRTGDDYVHRIGRTGRAGGEGLAISLITHGDWNLMSSIER
YLKQKFERRTIKEVKGTYTGPKKVKASGKAVGVKKKKTDAKGDKKGDKKKTAAKGPTKRK
TVNRPKADPLVSQDGLAPLKKRVTRPPVSE
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
gtgttctcccaattcgccctgcacgaacgcctgctcaaagccgtggccgaactcaatttc
gtcgagcctacgcctgtgcaaacagcggccattccgctggcgctggaaggacgcgatctg
cgggtgacggcacaaacgggcagcggtaagactgccgcattcgtattaccgatgctcaat
cgcctcatgggcccggccaaggttcgcgtcgacattcgcgcggtgatcctgctgccgacc
cgtgagctggcacagcagaccctcaaggaagtcgagcggttttctcagttcaccttcatc
aaggccggtctgatcaccggtggcgaagacttcaaggttcaggccgccatgctgcgcaag
gtgccggacattctgatcggcaccccgggccgtttgctggagcaactgaacgccggcaac
ctggacctcaagcaggtcgaactgctggtgctcgacgaagccgaccgcatgctggacatg
ggtttcgccgaagacgtggagcgcttggcgggcgagtgcgccaaccgtcagcagaccatg
ctgttctcggccactacgggtggctcaggtctgcgcgaaatgatcgccaaggtgcttaaa
gatccacagcatctgcaggtcaacagcgtcagcgaactggccgccggcacgcgccagcag
atcatcaccgccgaccataacgttcacaaggaacaggtgctgaactggctgctggccaac
gagacttaccagaaagccattatcttcaccaatacccgtgccatggcagaccgcatctac
ggtcgtctggtggcgctggagtacaaggcattcgtgctgcacggcgacaaggaccagaag
gaccgcaagctggcgatcgatcgcctgaagcagggcggcgtgaagatcctggtggccact
gatgtcgcggcccgtggtctggacgttgatggcctggacatggtcatcaacttcgacatg
ccgcgcaccggcgacgattacgttcaccgcatcggccggaccggccgtgcgggcggcgaa
ggtctggcgatctccctgatcacccacggtgactggaacctgatgtcgagcatcgagcgc
tacctcaagcagaagttcgagcgccgtaccatcaaggaagtcaaaggcacttacaccggg
cctaaaaaggtcaaggcctccggcaaagccgtgggtgtgaagaagaaaaagaccgacgcc
aaaggtgacaagaagggcgacaagaagaaaaccgccgccaagggcccgaccaaacgcaag
acggtgaaccgtccgaaggccgatccgttggtcagtcaggatggtctggcgccgctgaag
aaacgcgtcacccgtccgcccgtctcggaataa
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