Pseudomonas abietaniphila: ABDX87_11875
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Entry
ABDX87_11875 CDS
T11725
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pabn Pseudomonas abietaniphila
Pathway
pabn02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pabn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ABDX87_11875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pabn03021
]
ABDX87_11875
Transcription machinery [BR:
pabn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABDX87_11875
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
Rv2175c_wHTH
DUF6882
FaeA
Motif
Other DBs
NCBI-ProteinID:
XAW95684
LinkDB
All DBs
Position
2675967..2676485
Genome browser
AA seq
172 aa
AA seq
DB search
MSSFHSPQHQLVGTLYRDHRSWLLAWLKRNVACPHRAEDLSQDTFIRLLGREQLTEPREP
RAFLVQVAKGLLFDHFRRAALEQAYLSELMLIPEAEQPSLEEQQLILEDLKAIDRLLGKL
SSKARAAFLYSRLDGMAHAEIADTLGVSVPRIRQYLAQGMRQCYVALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtctttccacagtccccaacatcagcttgtcggaacgctctatcgcgaccatcgc
agctggttgctggcctggctgaaacgcaatgtcgcctgcccgcaccgcgccgaagacctg
agtcaggacaccttcatacgccttcttggccgcgagcaattgaccgaacctcgtgaacct
cgggcgtttctggttcaagtggccaaaggtttgctgttcgaccacttccgtcgagcggca
ctggaacaggcttacctcagcgaactgatgctgatcccggaagccgaacagccttctctc
gaagaacagcaactgatcctcgaagaccttaaagccatcgaccgcctgctcggcaagttg
tcgagcaaggcgcgcgcggcgtttttgtacagccgtctggatggcatggctcatgccgaa
atcgccgacacactcggcgtttccgtcccgcgtatacgtcagtatctggctcagggcatg
cgccagtgctatgtcgccctgtacggcgaaccgacatga
DBGET
integrated database retrieval system