KEGG   Pseudomonas abietaniphila: ABDX87_11875
Entry
ABDX87_11875      CDS       T11725                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pabn  Pseudomonas abietaniphila
Pathway
pabn02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pabn00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ABDX87_11875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pabn03021]
    ABDX87_11875
Transcription machinery [BR:pabn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ABDX87_11875
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Sigma70_ECF Rv2175c_wHTH DUF6882 FaeA
Other DBs
NCBI-ProteinID: XAW95684
LinkDB
Position
2675967..2676485
AA seq 172 aa
MSSFHSPQHQLVGTLYRDHRSWLLAWLKRNVACPHRAEDLSQDTFIRLLGREQLTEPREP
RAFLVQVAKGLLFDHFRRAALEQAYLSELMLIPEAEQPSLEEQQLILEDLKAIDRLLGKL
SSKARAAFLYSRLDGMAHAEIADTLGVSVPRIRQYLAQGMRQCYVALYGEPT
NT seq 519 nt   +upstreamnt  +downstreamnt
gtgtcgtctttccacagtccccaacatcagcttgtcggaacgctctatcgcgaccatcgc
agctggttgctggcctggctgaaacgcaatgtcgcctgcccgcaccgcgccgaagacctg
agtcaggacaccttcatacgccttcttggccgcgagcaattgaccgaacctcgtgaacct
cgggcgtttctggttcaagtggccaaaggtttgctgttcgaccacttccgtcgagcggca
ctggaacaggcttacctcagcgaactgatgctgatcccggaagccgaacagccttctctc
gaagaacagcaactgatcctcgaagaccttaaagccatcgaccgcctgctcggcaagttg
tcgagcaaggcgcgcgcggcgtttttgtacagccgtctggatggcatggctcatgccgaa
atcgccgacacactcggcgtttccgtcccgcgtatacgtcagtatctggctcagggcatg
cgccagtgctatgtcgccctgtacggcgaaccgacatga

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